Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_000869.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq9745 430 2e-117 >seq9745 Length=7305 Score = 430 bits (476), Expect = 2e-117 Identities = 690/984 (70%), Gaps = 28/984 (3%) Strand=Plus/Minus Query 1744 CGAAGATCGCATTTTTTATAGCCCAGTTTCTAAGTGCGGAGTTCTTTTCCTCTTCCAAGT 1803 |||||| |||||| | | ||||||| ||| || | |||||| || || || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1804 ACTCTTTATAGCTGGAGTTTGGTCCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1863 |||||||||| || ||||| ||||| |||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1864 TAATTTGAACTGGTTTGCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1923 ||| || || || || |||||| | | || ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1924 ACTCTTTAAAGTGTTTTAGATAATGCGGATCGACGTCATCGATGACGTTGAACCACGCAT 1983 | || ||||| ||||||| |||| ||||||| |||| ||| ||||||||| |||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1984 CATTATTATACACTTTTGGACTTAAATCTAAATGGCCACACAGATAATTATGTGGTCCCA 2043 |||| || ||| |||||| |||| ||| |||| || || | ||||| ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 2044 ATGACCTAGCCCACATCGTCTTCCCTGTTCTGCTATCACCCTCAATGACTATAGTTATTG 2103 |||| |||||||| || || ||||| ||||| ||||| || | |||||| | || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 2104 GTCTCAATGGCCGCGCA---CGACTGAGAACATTAT-TACAAGCCCACTCTTCAAG-TTC 2158 ||| |||| | || ||| | ||| || | | ||| |||| |||| ||| || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAA-CCCAGTCTTGAAGAATC 6438 Query 2159 TTCGGGAACTTGATTGAAAGANNNNNNNNNNAAGGGAGAAATATATTCCTCTATTGGAGG 2218 | ||| | ||| || || | || ||||||| |||| | ||||| Sbjct 6437 TCCGGTACGTTG-TTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGC 6379 Query 2219 AGTAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACAAAATCTTTAGG 2278 || ||| |||| ||||||| |||||| | ||||| ||||| | ||||||| || Sbjct 6378 CTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2279 GGCCTTTTCCCTCAGTATATTGAGGGCCGAAGCCTTGGACCCTGAATTGATTGCCTCGGC 2338 | |||||||| | ||| | | ||| | | || ||||| ||||| | || || || Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2339 ATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCCGATCTTCCATCGATTTG 2392 || | || || || ||||| ||| |||| | || ||||||||||| || || Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2393 GAAAATTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGCTTTAACATCTGTTGA 2452 ||| ||| ||||| ||||||| || || || || | || || | || Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGA 6142 Query 2453 GCT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAG 2509 ||| |||| ||||||| ||||| ||||||||||||| |||||||||||| || || Sbjct 6141 GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAG 6082 Query 2510 ATCGAAGAATCGGTTATTTTGGCATTTGAATTTTCCTTCGAATTGGATGAGGAGATGCAG 2569 ||||||||||| |||||| |||| || | || |||||||||||||| || | || || Sbjct 6081 ATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Query 2570 GTGAGGAGTCCCATCTTCATGGAGTTCCCTGCAGATTCTGATG-ATTAATTTATTAGTTG 2628 |||| || | |||||| ||| ||||| || ||||| ||| || ||| || Sbjct 6021 ACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTA-CTG 5963 Query 2629 GAGTTGATAGGTTT--AATATTTGGGAGAGTGCTTCTTCTTCTTTGGTGAGTGAGCAGTG 2686 | || ||||||| |||| ||| ||||| |||| ||||| || || |||||||| Sbjct 5962 GGGTATTTAGGTTTTGAATAATTGAGAGAG-----CTTCCTCTTTTGTAAGAGAGCAGTG 5908 Query 2687 TGGGTATGTGAGGAAATAATTCTT 2710 || ||||| || ||| ||| || Sbjct 5907 GGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8613466710420