Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_000882.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq9745 455 6e-125 >seq9745 Length=7305 Score = 455 bits (504), Expect = 6e-125 Identities = 694/978 (71%), Gaps = 23/978 (2%) Strand=Plus/Minus Query 1609 CGAAGATTGCATTCTTTAGAGCCCAATTTTTAAGTGCGGTGTTCTTTTCCTCTTCCAAGA 1668 |||||| |||||| | |||||||| |||| || | |||||| || || || | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1669 ACTCTTTATAGCTTGAATGTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1728 |||||||||| ||||| | |||||||||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1729 TAATTTGAACTGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGA 1788 ||| || || ||||||||||| || | || ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1789 ATTCTTTAAAATGCTTTAAGTAATGCGGATCGACGTCATCAATGACGTTATACCAAGGGT 1848 |||| |||||||| ||||| ||| ||||||| |||| |||||||||||| ||||| | | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1849 CGTTGTTGTACACTTTTGGGCTTAAGTCTAAATGACCACATAAATAGTTATGTGGTCCTA 1908 | ||||||||| ||||||||||| || ||||||| ||||| || || ||||| |||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1909 ACGACCTGGCCCACATTGTTTTCCCCGTCCTGCTATCACCCTCTACCACTATACTTATCG 1968 | || || ||||| ||||||||||| || || ||||| ||||| |||||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1969 GTCTTAATGGCCGCGC--AGGC-TTGACAACGTTTGCAGCAACCCATTCATTTAAGTTCC 2025 ||| |||| | | |||| | ||||||||| | ||||||| || || ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTC-TTGAAGAATC 6438 Query 2026 TCTGG-ACTTGGTCAAATG---AGACCAAAAAGGGGGAAATGTACATTTCTATTCGGAGG 2081 || || || | || ||||| | | ||| || |||| || ||| | | |||| Sbjct 6437 TCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGC-AGGTGGAGC 6379 Query 2082 CT-AAAAATCTTATCTAAATTACTATTTAAATTATGGAATTGTAAAATATAATCTTTTGG 2140 || || ||| |||| |||||| |||||| |||| || ||||| |||||||||||| Sbjct 6378 CTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2141 GGCCTCTTCTTTCAAAATTGCGAGTGCCGAAGCTTTGGTTCCTGAATTGAGTGCCTCGGC 2200 | | ||| | | || | | || | | ||| | || ||||| || || || || Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2201 ATATGCGTCGTTGGCAGATTGGCAACCCCCTC------GAGCCGATCTTCCATCGATCTG 2254 || | || || || ||||| |||||||| || ||||||||||| ||||| Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2255 GAAAACCCCATGATCAAGAACGTCTCCGTTTTTTGCGATATATTCTTTGACATCTGTTGA 2314 ||| | || ||||| ||||||| || ||||||| || || | || Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGA 6142 Query 2315 GCT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAG 2371 ||| |||| ||||||| ||||| ||||||||||||| |||||||||||| || || Sbjct 6141 GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAG 6082 Query 2372 GTCGAAGAATCGTGGATTTTTGCATTGGAATTTACCTTCGAATTGGATGAGGATATGCAA 2431 |||||||||| ||| ||||| | | || |||||||||||||| || | || | Sbjct 6081 ATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Query 2432 GTGAGGAGTCCCATCTTCGTGCAATTCCCTGCAAATCCTGATAAATAGTTTAATTGTAGG 2491 |||| || | ||| || ||| ||||||||| |||| || || || || Sbjct 6021 ACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGG 5962 Query 2492 GGTTTCTATGGCTTGGATTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCAATGTGGGTA 2551 ||| | || | ||| || || || ||||| ||||| || |||||||| || || || Sbjct 5961 GGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2552 TGTGAG-GAAATAGTTTT 2568 ||| || ||||| |||| Sbjct 5901 TGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8591275224600