Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001359.1 Length=2631 Score E Sequences producing significant alignments: (Bits) Value seq9745 412 6e-112 >seq9745 Length=7305 Score = 412 bits (456), Expect = 6e-112 Identities = 707/1016 (70%), Gaps = 30/1016 (3%) Strand=Plus/Minus Query 1555 TTTTTCTCTTCGCTGAGGTAGTCTTTATAGGAAGACTGGGGGCCCGGATTGCAAAGAAAG 1614 || || |||||| || | |||||||| || | ||| || ||||||||||| ||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1615 ATAGTGGGTATCCCACCTTTAATTTGAATTGGTTTGCCGTATTTGCAGTTTGATTGCCAA 1674 || ||||| ||||| ||||||| || || || || |||||| | | || | |||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1675 TCCCGTTGGGCCCCCATAAACTCTTTAAAGTGCTTAACATAATGCGGAGGGATGTCATCA 1734 || | || ||||||||| || || ||||| || || | |||| ||||| | || |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1735 ATGACGTTATACCATGCATTATTGGAGTAGATTTTTGGGCTGAGATCCATATGACCACAT 1794 |||||||| ||||| |||| |||| ||| |||||||||| | ||| |||||| ||| Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1795 ATGTAATTGTGTGGGCCGAGACTTCGGGCCCATAATGTTTTGCCTGTCCGTGAAGGACCC 1854 | ||||||||||||||| | || ||||||| |||||| || || | | ||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1855 TCGACCACTAATGACAATGGTCTCATTGGCCGCGCAGCGGCA-TCACATACATTATCAGA 1913 || || |||| || |||| |||| | ||| |||| ||||| || || || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACA-ACGTTTTCTTC 6457 Query 1914 CACCCATTGTGTCATTATTGCAGGCACATTATTAAAGGACGCCTG--TTGAAATGGAGGA 1971 ||||| | | | || | || || || ||||| | ||| | ||| |||| | Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTA--CTGGATACAAAAGGAGAA 6399 Query 1972 ACCCACGGTTCCGGGGGAGTTTGGAATATCCGAT------TAGCGTTTGACACAATGTTA 2025 || | | | || |||| ||||||||| || |||| ||| ||| | | Sbjct 6398 ACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTT-----AATCT-A 6345 Query 2026 TGAAATTGGAGGAAGAAATGCTGAGGTTGTTCTTCCTTTATGATCTGCAGAGCTTCTTCT 2085 ||||| | | | ||| | || ||| |||| | || |||| | ||| || | Sbjct 6344 TGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTT 6285 Query 2086 GCAGATGCTGAATTTAACGCCTTAGCATATGTGTCATTAGCAGACTGCTGTCCTCCTCTA 2145 ||| | ||||||| || | || || |||||||| || || || || ||||| Sbjct 6284 TTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTT 6225 Query 2146 G------CAGATCTGCCGTCTATTTGGAATTCTCCCCATTCTACGGTATCGCCGTCTTTG 2199 | ||||||| || || || |||||||||||||| || | ||||| |||| || Sbjct 6224 GTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTC 6165 Query 2200 TCGATGTACGTCTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2259 ||||| |||| ||| |||| |||||| |||||| ||||||| ||||| |||||||||||| Sbjct 6164 TCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGT 6105 Query 2260 GCTGATCTGGTAGAGGATACGAGGTCAAAGAATCGGTTGTTCGTGCATTGGTATTTTCCT 2319 | ||| ||||| | || || || || ||||||| ||| ||||||||| ||| || ||| Sbjct 6104 GTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCT 6045 Query 2320 TCGAACTGAATAAGCACGTGCAGATGAGGTTGCCCATCTTCATGAGATTCTTTGCAAATT 2379 ||||| || ||||||||||| ||| |||||| || | |||||||| |||| ||||||| Sbjct 6044 TCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATC 5985 Query 2380 TTGATGTACTTCTTGTTTACCGGCGTCGAGAGGTTTTG--TAGTTGAGCGAGACGCTCTT 2437 |||||||| ||||||||||| || || |||||||| || |||| |||| || | Sbjct 5984 TTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGA--GAGAGCTTCCT 5927 Query 2438 CTTTGGAAATGGAACATTGTGGATAGGTGAGGAAATAATTCTTGGCATTTAAACGAAATC 2497 |||| | || || || || ||||| || || ||| ||| || | | | ||||| | Sbjct 5926 CTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAAC 5867 Query 2498 GTTTAGGTAATGGCATATTTGTAATAAGAGAGGTGTACACCGA-TTGGAGCTCTTT 2552 | | |||||||||||||| | | | ||| |||| | ||| | |||||| Sbjct 5866 GAGAACTCGTTGGCATATTTGTAAGTAAATGGATGT-CACCAATTTGTATCTCTTT 5812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8233041239220