Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001412.1 Length=2994 Score E Sequences producing significant alignments: (Bits) Value seq9745 284 2e-73 >seq9745 Length=7305 Score = 284 bits (314), Expect = 2e-73 Identities = 669/986 (68%), Gaps = 67/986 (7%) Strand=Plus/Minus Query 2007 CCAGGACTTAAGGGCTTCATTTTCTGGTTTTTCAAGAAATTGTTGGTA---TGAGCTCTC 2063 ||||||||||| ||| | || | || |||||||| | || || |||| | Sbjct 6834 CCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTG-- 6777 Query 2064 AGGTCCTGGATTGCATAATATAATGCAGGGGATACCACCTTTAA-TGACACGTGGTTTTC 2122 |||||||||||||| | | || ||| || || ||||||| | | | | || |||| Sbjct 6776 -GGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAG-GGCTTTC 6719 Query 2123 CATACTTTAAGTTTGTCTGCCACTC-CTTTTGTGCTCCAATAAGGTGTTTCCAGTGTTTC 2181 | || || || |||||| || |||||| || || || | | || | ||||| Sbjct 6718 CGTATCTTCTATTATACTGCCAATCACTTTTG-GCCCCCATGAATTCCTTAAAATGTTT- 6661 Query 2182 ATCTTTAAGTAAGTGGGATCTACGTCATCAATGACGTTGTATTCCA--CTTCATCATAAT 2239 ||| ||| ||||| |||| ||||||||||||||| ||| | |||| | | Sbjct 6660 -----TAAATAACGCGGATCAACGTTATCAATGACGTTGTA--CCAGGCATCATTGTTGT 6608 Query 2240 ACGTTCTAGGGCTAAAATCTAAGTGCCCTGTGATGTAATTGTGGGCCCCTAAAGATCTAG 2299 ||||| | ||||| | ||| | || || | ||||||||| | ||||| ||||||| Sbjct 6607 ACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAG 6548 Query 2300 CCCACATAGTCTTCCCTGTTCTTGAATCACCCTCTACTATGATACTATTATATCTTAAAG 2359 |||| || || ||||| ||||| | ||||| ||||| | ||||| || || || Sbjct 6547 CCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAG 6488 Query 2360 GCCGCGCAGCGGCATCAACCCCGAAATATGCATCAGCCCATTCTTGCATTTCCTCAGGAA 2419 ||| | ||| |||| || || | | | ||| |||| ||||| | ||| || | Sbjct 6487 GCCTCCCAGAGGCACTCACAACG---TTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTA 6431 Query 2420 CGTTTGTGAATGA---GGACAGAGGAAATAGTGGAGTC-CATGGAT--CAGGTGGCCTCT 2473 |||| | |||| ||| | | ||| |||| ||| || ||||||| || Sbjct 6430 CGTTGTTAAATGTACTGGATACA--AAA----GGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2474 GAAATATCTTTTGAGCATTG---TTCAAAAGATTGTGATGTTGAAGGAAGTAATCCTTTG 2530 | |||||| | | ||| || || || | || || || ||||| |||| Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT--AAATAA-TAATCTTTTG 6320 Query 2531 GTTGTTCTTCCTTCAATATTTGAAGTGCT--TGGTCAAGA----GAAGTTGCGTTTAACG 2584 | ||| |||| | | ||| | | ||| || | ||| ||| |||| | Sbjct 6319 GGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAA------TTTAGGG 6266 Query 2585 CCTTGGCATATGAGTCGTTAGCTGTCTGTTGACCTCCTCTAGCACTT------CTACCGT 2638 | | || || || ||||| | |||||||| ||||| | | || || || | Sbjct 6265 CTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCAT 6206 Query 2639 CGATCTGGAATTCTCCCCATTCAATTGTGTCTCCGTCCTTGTCGACGTAGGACTTGACGT 2698 | ||||||||||||||||| |||||||| ||||||| ||| |||| || ||||| |||| Sbjct 6205 CCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT 6146 Query 2699 CGGAGCTGGATTTAGCTCTCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATA 2758 ||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||| || | Sbjct 6145 AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGA 6086 Query 2759 CCAGGTCGAATAATCTGATATTTGTG-ATCTGAACTTTTCCTTCGAGTTGAAGCAGGACG 2817 | || ||||| |||||| |||| ||| || || || || ||||||| ||| | || ||| Sbjct 6085 CAAGATCGAAGAATCTGTTATTCGTGCATGTGTAC-TTCCCTTCGAATTGGATAAGCACG 6027 Query 2818 TGGAGATGAGGTTGCCCATCTTCGTGTAGC-TCTCTGGCAATTTTAATATATTTTTTATT 2876 |||||| |||||| || | ||| || ||| |||||| ||| || || ||||| || || Sbjct 6026 TGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTT 5968 Query 2877 AGATGAAAGTTGTATTCTTTGAAT--TTGCTCAAGAGCTTCTTCTTTTGAAAGAGAACAC 2934 || | || ||||||| ||| |||||||| ||||||| |||||| || Sbjct 5967 TACTGGGGTATTTAGGTTTTGAATAATTG--AGAGAGCTTCCTCTTTTGTAAGAGAGCAG 5910 Query 2935 TGAGGATATGTAAGAAATATGTTTTT 2960 || |||||||| ||||| || ||||| Sbjct 5909 TGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9378065667850