Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001439.1 Length=2647 Score E Sequences producing significant alignments: (Bits) Value seq9745 244 2e-61 >seq9745 Length=7305 Score = 244 bits (270), Expect = 2e-61 Identities = 633/955 (66%), Gaps = 30/955 (3%) Strand=Plus/Minus Query 1679 AGCTCGGTTTTCCTCTTTGTTGAGGAAGTCTTTATAACTGGAACCCTCACCTGGATTGCA 1738 |||| ||| | |||| || || || ||||||||||| || ||||||||||| Sbjct 6822 AGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCA 6763 Query 1739 CAGCACGATTGATGGTATTCCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGA 1798 || | ||||| || || || ||||||| || || |||||||| ||| | | || | Sbjct 6762 AAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATA 6703 Query 1799 TTGCCAGTC-CTTTTGTGCCCCAATTAGCTCTTTCCAGTGCTTTAACTTCAAATAATTGG 1857 ||||| || |||||| ||||| || | || || | || ||||| |||| | Sbjct 6702 CTGCCAATCACTTTTG-GCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCG 6650 Query 1858 GGCTTATGTCATCAATGACGTTGTATTCCACTGAG--TTGGAATAGACACGTGAATTAAA 1915 | | || ||||||||||||||| ||| | ||| || || | | Sbjct 6649 GATCAACGTTATCAATGACGTTGTA--CCAGGCATCATTGTTGTACGTTTTTGGGCTTAT 6592 Query 1916 GTCCAAATGACCGCTCAAATAATTATGTGGGCCTAATGCACGAGCCCACATTGTCTTTCC 1975 || ||||||||| || ||||| ||||||||||||| | |||||| ||||| || || Sbjct 6591 ATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCC 6532 Query 1976 AGTTCGTGAATCACCTTCGACGATGATACTAATAGGTCTTTCTGGCCGCGCAGCGGAACC 2035 ||||| | |||||||| || | ||||| ||||||| | |||| | ||| || || Sbjct 6531 AGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACT 6472 Query 2036 CCTTCCGAAATAGTCGTCAACCCAGTCTTGCATAACAACCGGAATATTGACGAATGA--T 2093 | || | || |||||||||||||| | || |||| | ||| |||| | Sbjct 6471 CACAACG---TTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACT 6415 Query 2094 GACAACGGAAATGGAGGAACCCATGGTTCCGGC--ACTTTGAAGAAGATCCGTTCGAGAT 2151 | || ||| |||| ||| || | | || | || ||| ||| || | || Sbjct 6414 GGATAC--AAAAGGAGAAACATATATTGCAGGTGGAGCCTG--GAATATCATATCCAAAT 6359 Query 2152 TAGAACGGATGTTGTGATTTTGAAGGACGTAATCTTTCGGTTGTTCTTCCTTCAATATTG 2211 ||| | | | ||| | | |||||||| || ||| |||| | | ||| Sbjct 6358 TAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCT 6299 Query 2212 TCAAGGCAGATTCAATTGAATCTGCGTTTAATGCCTTTGCGTATGAGTCGTTGGCAGACT 2271 ||||| | | | || | | |||| || | |||||| || || || || | Sbjct 6298 CTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATT 6239 Query 2272 GCTGACCTCCTCTTG------CAGATCTGCCGTCGACTTGGAATTGTCCCCATTCGATTG 2325 | ||||| ||||||| ||||||| || || | ||||||| |||||| || |||| Sbjct 6238 GTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTG 6179 Query 2326 TGACTCCATCTTTGTCGATGTATTCTTTGACGTCGGAACTTGATTTAGCTCCCTGAATGT 2385 | |||| | || ||||| || || |||| ||| || |||||| ||||||| |||| Sbjct 6178 TATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGT 6119 Query 2386 TCGGATGGAAATGTGCTGACCTGGTTGTGGATACCAGGTCGAACAATCTTTTATTTGTGC 2445 | ||||||||||||| ||||||||||| || || || ||||| ||||| ||||| |||| Sbjct 6118 TTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGC 6059 Query 2446 AGATGAATTTACCTTCGAACTGAATAAGCGCATGAAGATGGGGTTCACCATTATCGTGAC 2505 | || | || |||||||| || |||||| | || ||| | ||||| | || || ||| Sbjct 6058 ATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAG 5999 Query 2506 GTTCCTCACAGACCTTGATGAATTTCTTATTCGTCGTTGTATGAATCTTTTGAAGTTGCG 2565 ||| || | ||||||| ||||||| || | |||| | ||||||| | Sbjct 5998 CTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG 5939 Query 2566 AAAGAGCTTCTTCTTTCGGTATAGTGCAACGAGGATAAGTGAG-GAAATAGTTTT 2619 | |||||||| ||||| | | || ||| | ||||| || || ||||| |||| Sbjct 5938 AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8283764635380