Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001467.1 Length=2779 Score E Sequences producing significant alignments: (Bits) Value seq9745 394 2e-106 >seq9745 Length=7305 Score = 394 bits (436), Expect = 2e-106 Identities = 689/995 (69%), Gaps = 12/995 (1%) Strand=Plus/Minus Query 1761 GAAGATTGCATTCTTTAATGCCCAGGCCTTTAGCGCTTCTTGCTTTTCCTCGGCTAGGAA 1820 ||||| |||||| | | ||||||| ||| | ||| | | ||| || ||| | || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1821 CTCTTTATAGGACGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTT 1880 ||||||||| ||| | |||||||||||||| |||||||| ||||| || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1881 AATTTGAACGGGTTTCCCGTATTTCGTGTTGGACTGCCAGTCCCTCTGGGACCCCATGAA 1940 || || || ||| || |||||| | | || ||||||| || || | || ||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1941 TTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCAGC 2000 ||||||||| || |||| || | ||||| |||| |||||||||||||||||||||| | Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 2001 ATTATTGAAGACCTTTGGACTAAGGTCCAGGTGTCCACACAGGTAATTATGTGGGCCTAA 2060 ||| ||| | ||||| || | || || || || | |||||| ||||||||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 2061 AGATCTGGCCCATATCGTCTTCCCTGTTCTGCTATCACCTTCTATGACAATACTATTAGG 2120 ||||| |||||||| || ||||| ||||| |||||||||| || ||||| |||| Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 2121 TCTCCATGGCCGCGCAGCGGAATCCCTAACATTATCAGCGACCCATTCTTCAATTTCAAC 2180 || |||| | ||| || | | ||| || || | ||||| |||| || | Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2181 AGGAACTTGGTCAAAGGAAGAACATGGGAAGGGAGAAACATAAGGAGCTGGTGGCTCTTG 2240 || || | || ||| | | || || ||||||||||| || ||||| | || Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG 6376 Query 2241 GAAAATCCTATCTAAATTACTATTTAGATTATG-AAACTGAAGTACAAAGTCCTTTGGGA 2299 ||| ||| |||| |||||| ||||| |||| |||| || || | | || |||||| Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATA-ATAATCTTTTGGGC 6317 Query 2300 CTAATTCCCTAATGA-CATTAAGAGCTTCTGACTTACTGCCGCTGTTAAGCGCTTTGGCG 2358 | ||||||||| | | |||| ||| ||| ||| || || || |||| ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2359 TAAGCATCATTCGCTGATTGTTGACCGCCTC------TAGCAGATCGTCCATCGATTTGA 2412 ||| ||||||| || ||||||||||| |||| | ||||||| |||||| || || Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2413 AATTGTCCCCATTCGACGGTGTCGCCGTCCTTATCCAGATAGGACTTGACATCCGAGCTT 2472 |||| |||||| || | || || |||| ||| || | ||| ||||| || | ||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2473 GATTTGGCACCTTGAATGTTGGGGTGGAAACTGGTGCTACAGCTTGGGTGTACACAATCG 2532 ||||| | || || ||||| || |||||| || | | |||| ||| |||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2533 AAGAGACGATTGTTCGTAATCGTGATTTTACCCTCGAATTGAATGAGGGCATGCAAGTGA 2592 |||| | || ||||| ||| || || |||||||| || || | || | || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2593 GGTTCCCCATTCTGATGCAGC-TCTCTACAGATTTTAATGAACTTAGGGTTTGATTGGAG 2651 ||||||| || | ||| ||| ||||| || || || ||| | || |||| | || Sbjct 6017 GGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGT 5959 Query 2652 AGAAAGTGTTTGAATGAATGACAGTAGGTGTTCTTTGGGTATAGAACACTTTGGGTATGT 2711 | || ||||||| | ||| || | ||||| | | ||| || | || ||||| Sbjct 5958 ATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGT 5899 Query 2712 GAGAAAGACATTCTTGGCTTGAATTCGAAAACGAG 2746 ||||| | ||| || | ||| |||||||||| Sbjct 5898 TAGAAAAATATTTTTAGAAGAAATGCGAAAACGAG 5864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8702232653700