Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001507.1 Length=2588 Score E Sequences producing significant alignments: (Bits) Value seq9745 331 2e-87 >seq9745 Length=7305 Score = 331 bits (366), Expect = 2e-87 Identities = 678/1002 (68%), Gaps = 37/1002 (4%) Strand=Plus/Minus Query 1581 TGAGGAAGACGAATTTCGCATTATGGAAAGTCCAGTTCTTTAGTGGAGTGTTTTCCTCTT 1640 ||||||| |||| ||||| || || |||| ||| | | | ||| | |||| Sbjct 6865 TGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTT 6806 Query 1641 TGTCGAGGAAAACTTTATAGCTAGCACCCTCTCCAGGATTGCACAGCACGATTGACGGGA 1700 ||| || || ||||||| || | ||| |||||||| || | ||||| || | Sbjct 6805 CGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCA 6746 Query 1701 TACCTCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTAGTCTGCCAATCTCTTTGGG 1760 | || ||||||| || || |||||||||||| | | ||| ||||||||| |||| || Sbjct 6745 TCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGG 6686 Query 1761 CCCCAATGAGTTCTTTCCAATGTTTCAACTTTAGATATTGCGGTGTGACATCATCGATGA 1820 |||| |||| ||| || ||||||| || ||| |||| || | ||| |||| Sbjct 6685 CCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGA 6632 Query 1821 CGTTATACT---CAACCTTGTTTGAGTAAACCCTAGAATTGAGATCCAAATGCCCGCTCA 1877 |||| ||| || | ||||| ||| | | | | ||| |||| |||| | Sbjct 6631 CGTTGTACCAGGCATCATTGTT---GTACGTTTTTGGGCTTATATCATAATGACCGCATA 6575 Query 1878 AATAATTATGTGGGCCTAGTGAACGAGCCCACATAGTCTTTCCCGTCCGACTATCGCCCT 1937 | ||||| |||||||||| ||| | |||||| || || || || || | | || || | Sbjct 6574 AGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTT 6515 Query 1938 CGATGATAATACTAATAGGTCTCTCCGGCCGCGCAGCGGAACTCTTTCCAAAATAATTTT 1997 | | | ||||| ||||||| | |||| | ||| || |||| ||| | | || Sbjct 6514 CTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTT 6458 Query 1998 CAGCCCA---TTGTCTCATCTCGTCTGGCACGTTAGTAAATGAT---GAGACGTGGAACG 2051 || |||| ||| ||||| || ||||| |||||| || || || | Sbjct 6457 CAACCCAGTCTTGAAGAATCTCC---GGTACGTTGTTAAATGTACTGGATACA---AAAG 6404 Query 2052 GAGGAAGCCATGGTTCAGGAGTCTTATCAAATATCCTATCTAAATTGCTATTTAGATTGT 2111 ||| || || | |||| | | |||||| |||| ||||| ||||| | | Sbjct 6403 GAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTAT 6344 Query 2112 GGAACTGAAATAAATATTTTTCTGGGATTTTCTCTCTAATTATCTGCAGGGCTTCTTCTT 2171 | || | || |||| | || |||| ||| || |||||||||| | |||| || || Sbjct 6343 GAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTT 6284 Query 2172 TGGAAGAAGCATTTAACGCCTCTGCTGCAGCGTCGTTAGATGTTTGGCAACCTCCTCTAG 2231 | || || ||||| || ||||| | | || |||| | ||| ||| ||||| | Sbjct 6283 TAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTG 6224 Query 2232 CACTTCGA------CCGTCGACCTGGAATTCTCCCCATACAAGAGTATCTCCGTCTTTGT 2285 | || | || || | ||||||||||||||| ||| |||||||||| || | Sbjct 6223 TAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCT 6164 Query 2286 CGATGTACGTCTTGACGTCGGAAGACGATTTAGCTCTCTGAATGTTTGGATGGAAATGTG 2345 |||| |||| ||| |||| ||| |||||| ||| ||| ||||||||||||||||||| Sbjct 6163 CGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTG 6104 Query 2346 CTGACCTTGTTGGGGATACCAGGTCGAAGAATCGTTGATTTTGGCAGCAGTATTTTCCCT 2405 |||||| ||||| || || || |||||||||| | ||| ||| ||| || || | Sbjct 6103 TTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTT 6044 Query 2406 CGAACTGAATAAGCACGTGGAGGTGAGGTTGCCCATCTTCATGAAGCTCTCTGCAGATTT 2465 |||| || |||||||||||||| |||||| || | ||||||| |||||||| || | Sbjct 6043 CGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCT 5984 Query 2466 TTATGAATTTTTTGTTAATCGGAGTGTTTAGGGCTTG--TAATTGAGAAAGTGATTCTTC 2523 | ||| |||| ||||| | || || |||||| ||| |||||||| || | ||| || Sbjct 5983 TGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAG--AGAGCTTCCTC 5926 Query 2524 TTTGGACAAGGAGCACTGAGGATATGTAAGAAAATAAttttt 2565 ||| | | ||||| || |||||||| |||||| |||||| Sbjct 5925 TTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8096722112040