Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001828.1 Length=2597 Score E Sequences producing significant alignments: (Bits) Value seq9745 390 2e-105 >seq9745 Length=7305 Score = 390 bits (432), Expect = 2e-105 Identities = 690/989 (70%), Gaps = 54/989 (5%) Strand=Plus/Minus Query 1547 CCAGGATTGCAAAGCACGATTGCTGGGATTCCGCCTTTAATTTGAACTGGCTTACCGTAC 1606 || ||||||||||| | ||||| || || |||||||||| || || ||||| ||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1607 TTGCAGTTTGATTGCCAATCTCTCTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1666 | | || | |||||||| || | |||||||| ||||| || | || |||| Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA---- 6658 Query 1667 AGATAATGCGGTGCGATGTCATCAATGACGTTATACTGCACGTCGTTTGAATA-GACCCT 1725 |||| |||| | | || |||||||||||| ||| | || || || | | Sbjct 6657 --ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 1726 GGTATTGAAGTCCAAATGTCCACTCAGATAATTATGTGGGCCTAACGCACGCGCCCACAT 1785 || || | || |||| || | | ||||| ||||||||||| | | ||||| || Sbjct 6599 GGGCTTATA-TCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATAT 6541 Query 1786 CGTCTTCCCTGTCCTTGAATCACCTTCTATGACAATACTCATGGGTCTATTTGGCCGCGC 1845 || ||||| || || | |||||||||| || |||||||| |||| | |||| | | Sbjct 6540 TGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCC 6481 Query 1846 AGCGGAACCAGCTC-CAAAATAAACATCCGCCCACTCTTGCATCTCATCGGGAACGTTAG 1904 || || || || ||| | | || |||| ||||| | || || ||||| Sbjct 6480 AGAGGCAC----TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGT 6425 Query 1905 TGAAAG-ACGAGAGGGGAAACGGAGGAACCCATGGTTCCGG---AGCCTTGGCGAATATT 1960 | || | || || ||| |||| ||| || | | || ||||| | ||||| Sbjct 6424 TAAATGTACTGGATACAAAA-GGAGAAACATATATTGCAGGTGGAGCCTGG---AATATC 6369 Query 1961 CTTTCTAGATTTGAGCGGATGT----TATGATTATGCAGGACAAAATCTTTTGGCTGTTC 2016 | || | ||| ||| || | ||||| | | | | |||||||||| ||| Sbjct 6368 ATATCCAAATT--AGC--ATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTT 6313 Query 2017 TTCTTTTAAAACTGCCATGGCAGACTGAACATTT----CCTGCATTTAACGCCTTTGCAT 2072 ||| | | | | | ||| | ||| ||| || | ||||| || | ||| | Sbjct 6312 TTCCCTAATTATCTCTAAGGCTG-CTGT---TTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2073 ATGAATCGTTAGCTGATTGTTGACCTCCCCTAG------CAGACCTACCGTCGATCTGGA 2126 | ||| ||||| ||||||||||| || || | |||| || || || ||||||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2127 ATTCTCCCCATTCCAGTGTGTCTCCGTCCTTGGTAATGTATGTTTTGACGTCGGAGCTGG 2186 |||||||||| || | ||| ||||||| ||| || || | || |||| |||||||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGG 6137 Query 2187 ATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCACATCGA 2246 ||||| ||||||||||||| ||||||||||||| |||||||||||| ||||| | ||||| Sbjct 6136 ATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGA 6077 Query 2247 AGAATCTGTTATTCGTGCAGTTGTATTTGCCTTCGAATTGGACAAGCACGTGGAGATGAG 2306 ||||||||||||||||||| |||| || ||||||||||||| ||||||||||||| ||| Sbjct 6076 AGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAG 6017 Query 2307 GTTCCCCATTTTCATGCAACTCTCTGCAGATCTTGATGAATTTCTTGTCTACTGGTGTGT 2366 |||||| |||||||| |||||||| ||||||||| ||||||||| |||||| || | Sbjct 6016 GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTAT 5957 Query 2367 TTAGGTTTTGTATTTGGGAAAGTGCTTCTTCTTTACTAAGGGAACACTGTGGATACGTGA 2426 |||||||||| || || || ||||| ||||| |||| || || || ||||| || | Sbjct 5956 TTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTA 5897 Query 2427 GGAAATAATTTTTGGCTTTAACTGAGAA----AGAACCCTTCCGTGGCATATTTGTAAAT 2482 | ||| |||||| | || || ||| ||||| || |||||||||||||| | Sbjct 5896 GAAAAATATTTTTAG-AAGAAATGCGAAAACGAGAAC---TCGTTGGCATATTTGTAAGT 5841 Query 2483 ATAT-GATGTTCCCCCAATTGCTCTCTCT 2510 | || ||||| | |||||| | ||||| Sbjct 5840 AAATGGATGT--CACCAATTTGTATCTCT 5814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8125254022380