Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001928.2 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq9745 376 4e-101 >seq9745 Length=7305 Score = 376 bits (416), Expect = 4e-101 Identities = 687/996 (69%), Gaps = 45/996 (5%) Strand=Plus/Minus Query 1634 GAAGATCGCATTCTTGAGAGTCCAGTTGCGTAGACCTGTATTTTCCTCTTTGTCCAGGTA 1693 ||||| ||||| |||||| |||| | | ||| || | |||| ||| || | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1694 CTCTTTATAGCTGGAACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCTCCTTT 1753 ||||||||| || || || ||||||||||| | ||||| || || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1754 AATTTGAACCGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAA 1813 || || || ||||| ||||| | | ||| ||||||| || ||| |||||||| || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1814 TTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTC 1873 ||| || | || |||| ||| |||| | |||| |||||||||||| ||| Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1874 CACTTCGTTCGAATAGACGCGACCATTG----AAGTCCAGGTGTCCACTGAGATAGTTAT 1929 | || || || || | | | || || || | | || || | Sbjct 6621 GGCATCATTGTTGTA----CGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGT 6566 Query 1930 GTGGGCCTAACGCACGTGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA 1989 |||||||||| | | ||||| || || ||||| || || | |||||||| || | | Sbjct 6565 GTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTA 6506 Query 1990 GACTCAATGGTCTGTCTGGCCGCGCAGCGGAACCACTCCCAAAATAATCATCCGCCCACT 2049 ||||| |||| || |||| | ||| || ||||| ||| | || || |||| | Sbjct 6505 TACTCATAGGTCGGTGAGGCCTCCCAGAGG---CACTCACAACGTTTTCTTCAACCCAGT 6449 Query 2050 CCTGCATCTCCTCGGGAACGGCCGTGAAAGAGGAGAGGGGA--AACCGCGGAACCCATGG 2107 | || | ||| || ||| || ||| | | || | || | | ||| || Sbjct 6448 CTTGAAGAATCTCCGGTACGTT-GTTAAAT-GTACTGGATACAAAAGGAGAAACATATAT 6391 Query 2108 TTCCGG---AGCCTTTGCGAATATTCTTTCGAGATTGGAGCGGATGT----TATGATTCT 2160 | | || ||||| |||||| | || | ||| ||| || | ||||| Sbjct 6390 TGCAGGTGGAGCCTG---GAATATCATATCCAAATT--AGC--ATTTAATCTATGAAAAC 6338 Query 2161 GAAGGACATAATCTTTTGGCTGTTCTTCCTTCAAAATGTTTAAGGCAGATTGAACATCTC 2220 | | |||||||||||| ||| |||| | | || | |||||| | | | | Sbjct 6337 GTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACC 6278 Query 2221 CTGCATTCAACGCCTTGGCATATGAATCATTAGCAGTCTGTTGGCCTCCCCTGG------ 2274 | | ||| | || | || || ||||||||| | ||||| || || || | Sbjct 6277 CAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTG 6218 Query 2275 CAGATCTGCCGTCGATCTGGAATTCTCCCCATTCAGCTGTATCTCCGTCCTTGTCGATGT 2334 ||||||| || || ||||||||||||||||| ||| ||||||||||| ||| ||||| | Sbjct 6217 CAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATAT 6158 Query 2335 AGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACC 2394 | ||||| |||| ||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 6157 ACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2395 TGGTTGGGGAGACCAGATCGAAGAATCTGTTATTCGTGCATTGGTATTTGCCTTCGAACT 2454 ||||||| ||||| ||||||||||||||||||||||||||| ||| || |||||||| | Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2455 GTATGAGCACATGGAGATGAGGCTCCCCATTCTCGTGAAGCTCTCTACAGATCTTGATGA 2514 | || ||||| |||||| |||| |||| || || ||| ||||| || ||||||||| Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGT 5978 Query 2515 ACTTCTTGTTCACTGGGGTTTCTAGGTTTTG--TAATTGGGAAAGTGCCTCATCTTTAGT 2572 | |||||||| |||||||| | ||||||||| |||||| || || | || ||||| || Sbjct 5977 ATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGT 5920 Query 2573 AAGAGAGCACTGGGGATATGTGAGGAAATAATTTTT 2608 ||||||||| ||||||||||| || ||| |||||| Sbjct 5919 AAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8236211451480