Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001931.1 Length=2615 Score E Sequences producing significant alignments: (Bits) Value seq9745 387 2e-104 >seq9745 Length=7305 Score = 387 bits (428), Expect = 2e-104 Identities = 625/895 (70%), Gaps = 23/895 (3%) Strand=Plus/Minus Query 1696 CCAGGATTGCATAGCACGATTGATGGGATCCCTCCTTTAATTTGAACAGGCTTGCCGTAC 1755 || |||||||| || | ||||| || ||||| ||||||| || || ||||| ||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1756 TTGCAATTTGACTGCCAATTCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAACTTT 1815 | | ||| ||||||||| ||| |||||| || |||||||| | || ||||| Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA---- 6658 Query 1816 AGATAATGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTCTGTGAACACTTTG 1875 |||| |||| | |||| |||||||||||| ||| | || | || || ||| Sbjct 6657 --ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 1876 GAATTGAAGTCTAGGTGTCCACTTAAATAATTATGTGGGCCTAGTGCTCGAGCCCACATC 1935 | | | || || || | ||| ||||| |||||||||| || || |||||| || Sbjct 6599 GGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATT 6540 Query 1936 GTCTTCCCTGTTCTCGAATCACCTTCTACTATGAGACTTACTGGTCTTTCTGGCCGCGCA 1995 || ||||| ||||| | ||||||||||| | | ||| | |||| | |||| | || Sbjct 6539 GTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCA 6480 Query 1996 GCGGAACCTCTCCCGAAATAATCGTCTGCCCACTCTTGCATCTCGTCTGGAACGTTAGTA 2055 | || || || | | | || || |||| ||||| | || || ||||| || Sbjct 6479 GAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTA 6423 Query 2056 GACGAAGAGAGGGGAAACGGAGGAACCCATGGTTCCGG---AGCCTTTTTGAATATGCTG 2112 | | | | ||| |||| ||| || | | || ||||| |||||| | Sbjct 6422 AATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG---GAATATCATA 6366 Query 2113 GTGGCGTTAGCGACCAGGTTGTGATGCTGAAGGAAGAAATGTTGCGGTTGTTCTTCCTTT 2172 ||||| | | ||| | | | ||| || || ||| |||| | Sbjct 6365 TCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTA 6306 Query 2173 ATTATGCGCAGAGCTTGCTCTGCG-GATCCTGCATTTAACGCCTTTGCGTATGTATCGTT 2231 ||||| | | || |||| | || || | ||||| || | |||||| ||| || Sbjct 6305 ATTAT-CTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATT 6247 Query 2232 AGCAGACTGCTGACCTCCTCTAG------CAGATCTGCCGTCGATTTGAAACACTCCCCA 2285 ||| || || ||||| ||||| | ||||||| || || || || || ||||||| Sbjct 6246 AGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCA 6187 Query 2286 TTCGACGGTGTCGCCGTCTTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCC 2345 || | || || |||| || ||||| || ||||| |||| ||||||||||||| |||| Sbjct 6186 ATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCC 6127 Query 2346 CTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAAACCAGATCGAAGAATCTGTT 2405 ||| ||||| ||||||||||||| |||||||||||| || || ||||||||||||||||| Sbjct 6126 CTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTT 6067 Query 2406 ATTCGTGCATTGGTATTTACCTTCGAACTGGATGAGGACGTGCAGATGAGGTTCCCCATC 2465 |||||||||| ||| || |||||||| ||||| || ||||| ||| ||||||||| | Sbjct 6066 ATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTT 6007 Query 2466 TTCGTGTAATTCCCTGCAAATCTTGATGAATTTCTTGTTAACTGGAGTTTTTAGGTTTTG 2525 ||| || ||| ||||||||||||||| |||||||||| ||||| || ||||||||||| Sbjct 6006 TTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTG 5947 Query 2526 GATTTGGGAAAGTGCTTCCTCTTTAGTAAGAGAGCACTGTGGATATGTGAGGAAA 2580 || || || ||||||||||| ||||||||||| || |||||||| || ||| Sbjct 5946 AATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8182317843060