Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001932.1 Length=2815 Score E Sequences producing significant alignments: (Bits) Value seq9745 376 4e-101 >seq9745 Length=7305 Score = 376 bits (416), Expect = 4e-101 Identities = 680/979 (69%), Gaps = 33/979 (3%) Strand=Plus/Minus Query 1828 GCATTTTTCAGAGCCCAGGCTTTTAATGCGCTATTCTTTTCCTCGTCCAGGAATTCTTTA 1887 |||||| | |||||||||| || | || ||||| || ||||| || || |||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1888 TAGCTGGAATTGGGGCCTGGATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGA 1947 || || || ||||| ||||||||||| |||||||| ||||| || || ||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1948 ACTGGCTTACCGTACTTGGTGTTTGATTGCCAGTC-CTCTGGGCCCCCATGAATTCTTTT 2006 | ||||| ||||| | | || | ||||| || || | ||||||||||||||| || Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 2007 GAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCATGCATCATTGTT 2066 || || |||| || | ||||| |||| |||||||||||||||||| ||||||||||| Sbjct 6668 AAA-TGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTT 6610 Query 2067 GTAGACCTTAGGACTTAAATCCAGGTGTCCACATAGGTAATTATGTGGACCCAATGCACG 2126 ||| || || |||| ||| || || |||| |||||| ||||| || |||| | Sbjct 6609 GTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCT 6550 Query 2127 GGACCACATGGTCTTGCCCGTCCGACTATCGCCTTCGATTACGATTGATTTTGGTCTCAA 2186 | ||| || || || || || | | || ||||| | || || | |||| Sbjct 6549 AGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTG 6490 Query 2187 AGGCCGCGCACG---ACCCATCACGTTTTCGTGGAACCACTCGTCGAGTTCTTCTGGAAC 2243 ||||| | || || || |||||||| | | ||| || | || || || || Sbjct 6489 AGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTAC 6430 Query 2244 TCGGTCAAACGAA---GAGAGAGGGAAAGGGTTCTCATAT---GGAGGTGGTGGTTTTGT 2297 || ||| | | || | | ||||| ||||| | |||||| | | Sbjct 6429 GTTGTTAAATGTACTGGATACA---AAAGGAGAAACATATATTGCAGGTGGAGCCTGG-- 6375 Query 2298 AAAAATCCGATCCAGGTTTGAACTGATGTGATGGAAGTCCCTAAG--ATAATCCCTAGGT 2355 || ||| ||||| || | | | | ||| || | ||| |||||| | || Sbjct 6374 -AATATCATATCCAAATTAGCATTTAATCTATGAAAA--CGTAAATAATAATCTTTTGGG 6318 Query 2356 GCTAATTCTCTAAGGATCT-TAAGAGCCTCTGATTTACTGCCGCTGTTAAGTGCCGCGGC 2414 | ||| |||| |||| |||| || ||| |||| || || || || | || Sbjct 6317 CGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2415 GTAAGCGTCGTTTGCAGATTGTTGACCCCCTCTGG------CTGATCGTCCATCGATCTG 2468 |||| | || || || ||||||||||||||||| | | |||| |||||| ||||| Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2469 AAATGTTCCCCATCTCCAA-GTATCACCGTCCTTGTCGATGTAGGACTTGACGTCGGAGC 2527 ||| |||||| || | ||||| |||| ||| ||||| || ||||| |||| ||||| Sbjct 6198 GAATTCTCCCCAA-TCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2528 TGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGTGATACCAGGT 2587 |||||||| ||||||| ||||||||||||||||||| |||||||||||| || || || | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2588 CGAAGAATCGCTGATTCTGGCATTTGTATTTGCCTTCGAACTGGATGAGCACGTGCAGAT 2647 ||||||||| | |||| |||| |||| || |||||||| ||||| |||||||| ||| Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2648 GAGGCTCCCCATTCTCATGTAGC-TCCCTGCATATTTTGATGAATTTAGGGTTTGTAGGT 2706 |||| |||| || ||||| ||| || ||||| || |||||| |||| |||| || Sbjct 6019 GAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGG 5961 Query 2707 GTTTGAAAGTTCCTAATTTGAGAGAGAGCCTCTTCTTTAGTTAAGGAGCATCGAGGGTAA 2766 || | | ||| ||| |||||||| || ||||| || | ||||| | || || Sbjct 5960 GTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATAT 5901 Query 2767 GTGAGGAAATAGTTTTTAG 2785 || || ||| ||||||| Sbjct 5900 GTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8810754497000