Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001936.1 Length=2634 Score E Sequences producing significant alignments: (Bits) Value seq9745 158 2e-35 >seq9745 Length=7305 Score = 158 bits (174), Expect = 2e-35 Identities = 231/327 (71%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 1700 AGCCGAGTTCTCGGCTTTGTCGAGGAAATCTTTATAACTGGACCCCTCTCCAGGATTGCA 1759 ||| | ||||| ||| ||| || || ||||||||||| || ||| |||||||| Sbjct 6822 AGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCA 6763 Query 1760 CAGCACGATTGATGGGATTCCACCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGA 1819 || | ||||| || || || ||||||| || || |||||||| ||| | | || | Sbjct 6762 AAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATA 6703 Query 1820 CTGCCAGTCCCTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTAATGCGG 1879 |||||| || |||| |||||| || |||||||| | | | |||| ||| |||| Sbjct 6702 CTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAAT------GTTTTAAATAACGCGG 6649 Query 1880 AGCGACGTCATCAATGACGTTATACTTGACGTCATTTGAGAAAACCCTAGAATTGAAATC 1939 | | |||| |||||||||||| ||| | | ||||| | | | | | | ||| Sbjct 6648 ATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATC 6589 Query 1940 AAGATGGCCGCTCAAGTAATTATGTGGGCCTAACGACCTAGCCCACATTGTCTTGCCCGT 1999 | ||| |||| |||||||| ||||||||||| || |||||||| ||||| || || || Sbjct 6588 ATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGT 6529 Query 2000 TCTTGAACCACCTTCTATGATTATACT 2026 ||| | ||||||||| | |||||| Sbjct 6528 TCTAGCCTCACCTTCTACAACTATACT 6502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8242551876000