Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001938.1 Length=2601 Score E Sequences producing significant alignments: (Bits) Value seq9745 398 1e-107 >seq9745 Length=7305 Score = 398 bits (440), Expect = 1e-107 Identities = 677/978 (69%), Gaps = 25/978 (3%) Strand=Plus/Minus Query 1601 GAAGATCGCATTCTTGATAGTCCAGTTCTTGAGACCTGTATTTTCTGCTTTGTCTAAGAA 1660 ||||| ||||| ||| || |||| ||| | | ||| || | ||| ||| | || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1661 CTCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCGCCTTT 1720 ||||||||| || | || ||||||||||| | ||||| || || |||||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1721 AATTTGAACTGGCTTACCGTACTTGCAATTTGATTGCCAATCTTTCTGGGCCCCCAGCAA 1780 || || || ||||| ||||| | | ||| | |||||||| | | |||||||| || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1781 TTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGTGCGATGTCATCAATGACGTTATACTG 1840 ||| || | || |||| |||| |||| | | || |||||||||||| ||| Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1841 CACATCATTCGAGAAGACTCGACCATTGAAGTCTAGGTGTCCACTGAGATAGTTATGTGG 1900 ||||||| | | | | | || || || | | || || ||||| Sbjct 6621 GGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGG 6562 Query 1901 GCCTAACGCACGCGCCCACATCGTCTTCCCTGTTCTTGAATCACCCTCGACGATGATACT 1960 |||||| | | ||||| || || ||||| ||||| | ||||| || || | ||||| Sbjct 6561 GCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACT 6502 Query 1961 TACAGGTCTATCCGGCGGCGCAGCGTCACCCGTCCCGAAATAATTATCCGCCCATTCCTG 2020 | ||||| | ||| | ||| | ||| || | | | | || |||| || || Sbjct 6501 CATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTG 6445 Query 2021 CATCTCGTCAGGAACGTTAGTGAAAGAAGAGACTTGAAATGGAGGAACCCACGGTTCCGG 2080 | || || ||||| | || | | | | ||| |||| ||| | | | || Sbjct 6444 AAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGG 6385 Query 2081 ---AGCCTTTGCGAATATTCGTTCTAGGTTAGAGCGGATGTTATGATTTTGTAATACAAA 2137 ||||| |||||| || | |||| | ||||| |||| | | Sbjct 6384 TGGAGCCTG---GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATA 6328 Query 2138 ATCTTTTGGTTGTTCTTCCCTTAGAACCGCTAAGGCAGATTGAACCGAACCTGCATTTAA 2197 ||||||||| ||| |||||| | | | ||||||| | | || || | ||||| Sbjct 6327 ATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAG 6268 Query 2198 TGCTTTCGCATATGAATCATTAGCAGACTGCTGGCCTCCTCTGG------CAGATCTGCC 2251 |||| || || ||||||||| || || || || ||||| | ||||||| || Sbjct 6267 GGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCC 6208 Query 2252 GTCGATTTGGAAATCTCCCCATTCGATTGTATCTCCGTCCTTGTCGATGTATGATTTGAC 2311 || || ||||| |||||||| || ||||||||||||| ||| ||||| || || || || Sbjct 6207 ATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCAC 6148 Query 2312 GTCGGAGCTCGATTTAGCTCCCTGAATATTCGGATGGAAATGTGCTGACCGGGTTGGGGA 2371 || |||||| |||||| ||||||| || || ||||||||||||| ||||| |||||| || Sbjct 6147 GTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGA 6088 Query 2372 GACCAGGTCGAAGAATCTGTTATTCGTGCATTGGTACTTACCTTCGAACTGAACAAGCAC 2431 ||| || |||||||||||||||||||||||| |||||| |||||||| || | |||||| Sbjct 6087 GACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCAC 6028 Query 2432 ATGGAGATGAGGTTCCCCATTTTCATGAAGCTCTCTGCAAATTTTGATGAATTTCTTGTT 2491 |||||| ||||||||| ||||||||| ||||||||||| |||||| |||||||||| Sbjct 6027 GTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTT 5968 Query 2492 GACTGGGGTATTTAGGTTTTG--TAATTGGGAAAGTGCTTCTTCTTTAGATAGAGAGCAC 2549 |||||||||||||||||||| ||||| || || ||||| ||||| | |||||||| Sbjct 5967 TACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAG 5910 Query 2550 TGGGGATAAGTTAGGAAA 2567 |||||||| ||||| ||| Sbjct 5909 TGGGGATATGTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8137934871420