Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001983.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq9745 275 1e-70 >seq9745 Length=7305 Score = 275 bits (304), Expect = 1e-70 Identities = 652/971 (67%), Gaps = 37/971 (4%) Strand=Plus/Minus Query 1717 GCATTCTTTGA-AGCCCACAATTTGAGTGCTGTATTATCAGCCTCGTCCAAGTACTCTTT 1775 ||||| | ||| |||||| | || | |||| || | | | ||||| | ||||||| Sbjct 6848 GCATT-TATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTT 6790 Query 1776 ATAAGAGGATTTTGGTCCAGGATTGCATAAAAAGATGGTGGGGATACCACCTTTAATATG 1835 |||| || || ||||| |||||||| | ||||| ||||| || || ||||||| | Sbjct 6789 ATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTA 6730 Query 1836 AGTGGGCTTCCCGTACTTGACGTTAGATTGCCAGTCTCTTTGCGCGCCCATGAATTCTTT 1895 | |||||| ||||| | ||| | ||||| || |||| || ||||||||||| || Sbjct 6729 AAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTT 6670 Query 1896 GAAATGTTTCAAATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCATCGTTGGA 1955 |||||||| |||||| | ||||| |||| |||||||||||| ||||| ||||| ||| Sbjct 6669 AAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTT 6610 Query 1956 ATAGATCTTACTGTTAAGATCCAAGTGGCCGCAAAGATAATTGTGAGGACCTAACGCACG 2015 || | || | | | ||| | || ||||| | |||||||| || ||||| | | Sbjct 6609 GTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCT 6550 Query 2016 TGCCCACATTGTTTTACCCGTGCGACTATCGCCTTCAATCACAATGCTAATCGGTCTTTC 2075 ||||| |||||||| || || | | || ||||| | || || || || |||| | Sbjct 6549 AGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTG 6490 Query 2076 CGG---CGCAGCGGGATGTCTAACATTTTCTGAAGCCCA----TGAAGAAATGTAACTTG 2128 || | ||| || | ||| |||||| | |||| ||||| ||| | | Sbjct 6489 AGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAG-AATCT---CCG 6434 Query 2129 GGACTTTGTCAAATG--CT-GATAAGCTATAAGGTGACACGTAAAGTGGAACTTCATCTG 2185 | || |||| ||||| || |||| | |||| || || || | || | | | | Sbjct 6433 GTACGTTGTTAAATGTACTGGATA---CAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2186 AAAAAATCCGTGACAAATTACAATTTAAATTATGAAATTGTAAAATATAATCTTTAGGAG 2245 || ||| ||||||| |||||| ||||||| ||||| ||||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2246 CCTTCTCCCTCAGTATATTGAGGGC--CTGTAACTTGGATCCACTGTTGAGTGCCTCGGC 2303 || ||||| | ||| | | ||| |||| || || ||| || || || || || Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGT--TTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2304 ATAAGCGTCGTTGGCAGACTGTTTACCTCCTC------TAGCTGATCTGCCATCGACTTG 2357 ||| | || || || || |||| ||| |||| | || ||||| ||||| | || Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2358 GAAACTTCCATGGTCAACGACGTCTCCGTCTTTGTCCATGTATGACTTAACATCTGATGC 2417 ||| ||| |||| ||||||| || || || || ||||| || | || Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCT 6139 Query 2418 GCTTTTAGCTGCCTGAACGTTCGGATGGTAATGTGCTGATCTGGTTGAGGAAACCAGGTC 2477 | |||| || |||| | ||| |||||| |||||| ||| ||||||| || || || || Sbjct 6138 GGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATC 6079 Query 2478 GAAGAACCTTTCGTTCTTCGT---TTGGAACTTCCCTTCGAATTGAAGCAGAACATGGAG 2534 |||||| || ||| ||||| | | |||||||||||||||| | || || ||||| Sbjct 6078 GAAGAATCT---GTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Query 2535 ATGAGGTTCTCCATCTTCATGAAGTTCACGACAGACTCGGATGAACTTCTTGTTGACAGG 2594 | ||||||| | | ||||||| ||| | || | |||| | |||||||| || || Sbjct 6021 ACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGG 5962 Query 2595 CGTTGATAACGCTAAGAGTTCTTCA-AGAGCGTCCTCCTTTCTAAGAGGACAACGGGGAT 2653 | | | | | | || | || | ||||| ||||| ||| |||||| || |||||| Sbjct 5961 -GGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGAT 5903 Query 2654 AAGTGAGGAAA 2664 | || || ||| Sbjct 5902 ATGTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8524700767140