Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_002046.1 Length=2642 Score E Sequences producing significant alignments: (Bits) Value seq9745 401 1e-108 >seq9745 Length=7305 Score = 401 bits (444), Expect = 1e-108 Identities = 687/990 (69%), Gaps = 34/990 (3%) Strand=Plus/Minus Query 1635 GAAGATCGCATTCTTGATAGTCCAGTTCCTGAGACCTGTATTTTCCTCCTTGTCTAGGAA 1694 ||||| ||||| ||| || |||| | | | | ||| || | || | ||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1695 CTCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTT 1754 ||||||||| || | || ||||||||||| | ||||| || || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1755 AATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAA 1814 || || || ||||| |||||| | | ||| |||||||||| ||| |||||||| || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1815 TTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTC 1874 ||| || | || |||| ||| |||| | |||| |||||||||||| ||| Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1875 CACTTCGTTCGAATAGACTCGACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGG 1934 | || || || | | | || || || | | |||||| ||||| Sbjct 6621 GGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGG 6562 Query 1935 GCCTAACGCACGTGCCCACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGAGACT 1994 |||||| | | ||||| || || ||||| ||||| | ||||||||||| | | ||| Sbjct 6561 GCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACT 6502 Query 1995 TAATGGTCTGTCTGGCCGCGCAGCGGAACCCGAACCAAAAAATTCATCCGCCCATTCTTG 2054 | |||| || |||| | ||| || || | ||| ||| || |||| ||||| Sbjct 6501 CATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTTG 6445 Query 2055 CATCTCGTCGGGAACGTTAGTGAAAGAGGAGAGTTGAAATGGAGGAACCCACGGTTCCGG 2114 | || || ||||| | || | | | ||| |||| ||| | | | || Sbjct 6444 AAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGG 6385 Query 2115 ---AGCCTTGGCGAATATCCTCTCTAAGTTGGAGCGGATGT----TATGATTCTGCAAGA 2167 ||||| | |||||| | || || || ||| || | ||||| | || Sbjct 6384 TGGAGCCTGG---AATATCATATCCAAATT--AGC--ATTTAATCTATGAAAACGTAAAT 6332 Query 2168 CAAAATCTTTTGGCTGTTCTTCCCTTAAAACCGCTAAGGCAGATTGAACAGAATCTGCAT 2227 | |||||||||| ||| |||||| | | | ||||||| | | ||| | | || Sbjct 6331 AATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAAT 6272 Query 2228 TTAACGCCTTTGCATATGAATCATTAGCAGTCTGCTGGCCTCCTCTAG------CTGATC 2281 ||| || | ||| || ||||||||| | || || || ||||| | | |||| Sbjct 6271 TTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATC 6212 Query 2282 TGCCGTCGATCTGGAACTCTCCCCATTCCACTGTATCACCGTCCTTGTCGATGTAAGACT 2341 | || || |||||||| |||||||| || | |||||| |||| ||| ||||| || |||| Sbjct 6211 TTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACT 6152 Query 2342 TGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTGGTTG 2401 | |||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 6151 TCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTG 6092 Query 2402 GGGAGACCAGATCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCTTCGAACTGTAAGA 2461 | ||||| |||||||||||||||||||||||||| ||| ||||||||||| || | | Sbjct 6091 GAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAA 6032 Query 2462 GCACATGGAGATGAGGCTCCCCATTTTCGTGAAGCTCTCTGCAGATTTTGATGAACTTCT 2521 |||| |||||| |||| |||| ||||| ||| |||||||| || |||||| | |||| Sbjct 6031 GCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCT 5972 Query 2522 TGTTCACTGTGGTATTTAGGCTTTG--TAATTGGGAAAGTGCTTCTTCTTTGGTCAGAGA 2579 |||| |||| |||||||||| |||| ||||| || || ||||| ||||| || ||||| Sbjct 5971 TGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGA 5914 Query 2580 GCACTGTGGATAAGTGA-CCAAATAGTTTT 2608 ||| || ||||| || | ||||| |||| Sbjct 5913 GCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8267913574080