Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_002048.1 Length=2584 Score E Sequences producing significant alignments: (Bits) Value seq9745 271 1e-69 >seq9745 Length=7305 Score = 271 bits (300), Expect = 1e-69 Identities = 655/984 (67%), Gaps = 37/984 (4%) Strand=Plus/Minus Query 1443 GAAGACAGCATTCTTTAGAGTCCAGTTTTTGAGAGACGCATTATCTTCTTTCTCGAGGAA 1502 |||||| ||||| | |||| |||| || | || || || | |||| || || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1503 AGCTTTATAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTT 1562 ||||||| || || || |||||||| || | ||||| || ||||| ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1563 AATTTGAACAGGCTTTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCAATGAG 1622 || || || ||||||||||| | | ||| | |||||||| ||| |||||| |||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1623 TTCTTTCCAGTGCTTTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATATTC 1682 ||| || | || |||| ||| |||| | |||| |||||||||||| || | Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTA--C 6624 Query 1683 CA--CTTCATTCGAATAGACCCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTATGT 1740 || | ||||| || | | | | |||| |||||||| |||||||| ||| Sbjct 6623 CAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGT 6564 Query 1741 GGGCCTAAGACCCGAGCCCACATCGTCTTCCCCGTTCGAGAGTCACCTTCAATGATAATA 1800 |||||||| | |||||| || || ||||| |||| || |||||||| | | ||| Sbjct 6563 GGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATA 6504 Query 1801 CTAATAGGTCTTTCCCGGCGCGCAGCGGCACTCCTTCCAAAATAGTCATCAGCCCAC-CT 1859 || ||||||| | | | | ||| ||||||| ||| | || ||| |||| || Sbjct 6503 CTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCT 6447 Query 1860 T--AGCATCTCGTCCGGAACGTTAGTGAAAGAGGAGAGTGGAAACGGAGGAGCCCATGGT 1917 | || ||||| ||| ||||| | || | | | ||| |||| | | || | Sbjct 6446 TGAAGAATCTC---CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATT 6390 Query 1918 TCCGGAGCATTTGCGAATATTCGTTCAAGATTCGAACGAATGTTATGATTTTGAAGGACA 1977 | || | | |||||| || | ||| | | | ||||| | | | Sbjct 6389 GCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAA 6330 Query 1978 AAGTCCTTCGGTTGTTCTTCTCTCAATATATTGAGGGCCTCGG----AGACCGTGCCTGA 2033 | || || || ||| ||| || | ||| | | ||| | | ||||| | || Sbjct 6329 TAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACC----CAGA 6274 Query 2034 ATTGAGGGCTTTGGCATATGAATCATTGGCAGTCTGGCAACCTCCTCTAG------CTGA 2087 ||| ||||||| || || |||||| || | || ||| ||||| | | || Sbjct 6273 ATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGA 6214 Query 2088 TCGTCCATCGATCTGGAAAATTCCAAAATCAATGAAGTCTCCGTCTTTTTCCACATAGGT 2147 || |||||| |||||||| ||| ||||||| ||||||| || || | ||| | Sbjct 6213 TCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGA 6154 Query 2148 CTTGACGTCTGAAGACGATTTAGCTCTCTGTATGTTCGGATGGAAATGTGCTGACCTGGT 2207 ||| |||| || |||||| ||| ||||||||| ||||||||||||| ||||||||| Sbjct 6153 CTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGT 6094 Query 2208 TGGGGATACCAAGTCGAAGAATCGTTGATTGGTGCACTGGTACTTTCCTTCGAACTGGAT 2267 ||| || || | |||||||||| | ||| ||||| |||||| |||||||| ||||| Sbjct 6093 TGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGAT 6034 Query 2268 GAGAACGTGGAGATGAGGTTGCCCATCTTCGTGTAGTTCTCTTGAAACACGAATGAATTT 2327 || ||||||||| |||||| || | ||| || |||||| ||| ||| |||| Sbjct 6033 AAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTT 5974 Query 2328 CTTAGAAGTTGGGGTTTCTAGGTTTTGCA--ATTGGGAAAGGGCTTCTTCTTTTGTGAGC 2385 ||| |||||| | ||||||||| | |||| || || |||| |||||||| || Sbjct 5973 CTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGA 5916 Query 2386 GAACACTGGGGATATGTGAGGAAA 2409 || || ||||||||||| || ||| Sbjct 5915 GAGCAGTGGGGATATGTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8084041263000