Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_002510.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value seq9745 535 7e-149 >seq9745 Length=7305 Score = 535 bits (592), Expect = 7e-149 Identities = 699/958 (73%), Gaps = 16/958 (2%) Strand=Plus/Minus Query 1654 GCCCAGGATTTGAGATGCGCGTTCTTGTCCTCGTCTAAATACTCTTTATAAGAGGAATTG 1713 |||||||| || | | |||||||| || ||||| | | ||||||||||| || ||| Sbjct 6836 GCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTG 6777 Query 1714 GGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGTTTCCCG 1773 || ||||||||||| ||||||||||| || || || ||||||| || || || || ||| Sbjct 6776 GGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCG 6717 Query 1774 TATTTTGTGTTGCTTTGCCAGTC-CTTTTGTGCCCCCATGAACTCCTTAAAGTGTTTCAG 1832 ||| || | || ||||| || |||||| ||||||||||| |||||||| ||||| | Sbjct 6716 TATCTTCTATTATACTGCCAATCACTTTTG-GCCCCCATGAATTCCTTAAAATGTTTTAA 6658 Query 1833 ATAATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATTACTGAACACCTTTGG 1892 |||| |||| ||||| | ||| |||||||| ||||| || ||||| || || ||||| Sbjct 6657 ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGG 6598 Query 1893 GCTCAGATCAAGATGACCGCACAGATAATTGTGAGGCCCAAGACTTCTGGCCCATACGGT 1952 ||| | |||| ||||||||| | |||||||| || || | ||| ||||||| || Sbjct 6597 GCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGT 6538 Query 1953 CTTTCCTGTTCTGCTTTCCCCTTCAATCACTATACTAATCGGTCTACTTGGCCGCGCAGC 2012 || || ||||| || ||||| | |||||||| || |||| |||| | ||| Sbjct 6537 TTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGA 6478 Query 2013 GGC-CTCAACGACGTTCTCCGCCGCCCATTCTTCAAGTTCTTCTGGAACTTGGTCGAACG 2071 ||| |||| | ||||| || | |||| |||| ||| || || || | || || | Sbjct 6477 GGCACTCA-CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATG 6419 Query 2072 AAGAAGACAAAAAAGGAGAAACATAAGGAGCTGGAGGCTCCTGAAAAATCCTCTCTAAAT 2131 | || | ||||||||||||||| || || || |||| || ||| | || |||| Sbjct 6418 TACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAAT 6359 Query 2132 TACTATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTAACTCCCTTA-TAACC 2190 || |||||| ||||||| ||||| | ||||||| || | ||||| | || | Sbjct 6358 TAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCT 6299 Query 2191 CTAAGAGCCTCTGCCTTACTTCCTGCGTTAAGCGCTGCGGCGTAAGCGTCATTGGCGGTC 2250 ||||| || ||| ||| || | || || ||| | |||||| | ||||| || | Sbjct 6298 CTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGAT 6240 Query 2251 TGTTGTCCTCCTC------TTGCAGATCTTCCGTCGATCTGGAATTCTCCCCATTCCAGT 2304 ||||| || |||| ||||||||||||| || ||||||||||||||||| || | | Sbjct 6239 TGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATT 6180 Query 2305 GTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATG 2364 || ||||| | ||| ||||| || ||||| |||| ||||||||||||| ||||||| ||| Sbjct 6179 GTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATG 6120 Query 2365 TTTGGATGGAAATGTGCTGACCTATTTGGGGAGACCAGGTCGAAGAGTCTCTGATTTTGG 2424 |||||||||||||||| |||||| |||| ||||| || ||||||| ||| | ||| | Sbjct 6119 TTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTG 6060 Query 2425 CACTTGAACTTCCCTTCGAACTGGAGAAGCACATGTAGATGAGGTTGGCCATCCTCGTGA 2484 || || ||||||||||||| |||| |||||| || ||| |||||| | | || ||| Sbjct 6059 CATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGA 6000 Query 2485 AGCTCTCTGCAGATCTTGATATATTTCTTGTTTGAAGCTGTGCTTA--TTTTCTGTATTT 2542 |||||||| |||||||| |||||||||||| | || ||| |||| || || Sbjct 5999 GCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT 5940 Query 2543 GCTCTAGGGCTTCCTCTTTTGTTAGAGAACATTTTGGGAAAGTTAGGAAATAATTCTT 2600 | || |||||||||||||| ||||| || | || | ||||| ||| ||| || Sbjct 5939 G--AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8654679469800