Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_002555.1 Length=2622 Score E Sequences producing significant alignments: (Bits) Value seq9745 340 3e-90 >seq9745 Length=7305 Score = 340 bits (376), Expect = 3e-90 Identities = 668/970 (69%), Gaps = 46/970 (5%) Strand=Plus/Minus Query 1645 ACTTAAT-GCTGAGTTCTCTTCTTTGTCGAGGAAACATTTATAGCTGGCCCCCTCGCCAG 1703 ||||||| |||| ||||| |||| ||| || || |||||| || | || | Sbjct 6829 ACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTG 6770 Query 1704 GATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTATTTAC 1763 |||||||||| | ||| || || || ||||||| || || |||||||||||| | | Sbjct 6769 GATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC 6710 Query 1764 AGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAACTTTAGAT 1823 || | |||||||| |||| |||||| || ||||| || | || ||||| || Sbjct 6709 TATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------AT 6656 Query 1824 AGTGCGGTGCGATGTCATCGATGACGTTATATTCAACATGATTTGAATAAACCCTAGGAT 1883 | |||| | | || ||| |||||||| || ||| ||| || | || Sbjct 6655 AACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGC 6596 Query 1884 TGAAATCGAGGTGACCACTCAAATAATTATGGGCCCCTAATGCACGTGCCCACATCGTCT 1943 | | ||| ||||| | || ||||| || | ||||||| | ||||| || || | Sbjct 6595 TTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTT 6536 Query 1944 TTCCCGTTCGAGAATCACCTTCAATGATGATACTAATAGGTCGTTCCGGCCGCGCAGCGG 2003 | || |||| || |||||||| | | ||||| |||||||| | |||| | ||| || Sbjct 6535 TCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGG 6476 Query 2004 CACCTCTCCCAAAATAGTCATCTGCCCAATCTTGCATC-TCTCTCGGTACGTTAGTGAAA 2062 ||| || ||| | || || |||| ||||| | |||| ||||||||| | || Sbjct 6475 CAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC-CGGTACGTTGTTAAAT 6420 Query 2063 GA---GGAGA-----GGGGAAACGTAGGGGCCCATGGCTCC-GGAGCCCTTGCAAATATC 2113 | ||| | || ||||| || || || |||||| || || |||| Sbjct 6419 GTACTGGATACAAAAGGAGAAACATAT------ATTGCAGGTGGAGCC--TGGAA-TATC 6369 Query 2114 CTATCTAAATTACTATTTAGATTGTGAAACTG-AAATAAGAACTTTTCCGGCATCTTCTC 2172 |||| |||||| ||||| | ||||| | |||||| || ||| ||| | || || Sbjct 6368 ATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTT-TC 6310 Query 2173 CCGGATTATCTGCAAGGC-GATGTCTTTGGAAGGTGCGTTCAAGGCTTCTGCGGCAGCGT 2231 || ||||||| ||||| | ||| ||| || | || | |||||||||| | | | Sbjct 6309 CCTAATTATCTCTAAGGCTGCTGT-TTTAGACCCAGAATTTAGGGCTTCTGCGTAAACAT 6251 Query 2232 CGTTAGCTGTCTGGCAACCGCCTCTAGCACTT------CTGCCGTCGATTTGGAATTCCC 2285 | ||||| | || ||| ||||| | | || || || || || |||||||| | Sbjct 6250 CATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTC 6191 Query 2286 CCCATTCGATAGTATCTCCGTCCTTGTCGACATAGGACTTGACGTCGGACGATGATTTAG 2345 |||| || || |||||||||| ||| |||| ||| ||||| |||| ||| |||||| Sbjct 6190 CCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTAC 6131 Query 2346 CTCTCTGAATGTTCGGATGGAAATGTGTTGACCTTGTTGGGGAGACCAGGTCGAAGAATC 2405 ||| ||| ||||| |||||||||||||||||||| ||||| ||||| || |||||||||| Sbjct 6130 CTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATC 6071 Query 2406 GTTGATTTTGGCAGCAGTAGTTGCCTTCGAATTGAAGAAGCACATGGAGATGAGGCTCCC 2465 | ||| ||| ||| || ||||||||||| | |||||| |||||| |||| |||| Sbjct 6070 TGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCC 6011 Query 2466 CATTTTCATGGAGCT-CTCTGCAAACTTTGATGAACTTCTTATTTGTAGGAGTGTTTAGG 2524 |||||||| |||| ||||||||| |||||| | ||||| ||| || || |||||| Sbjct 6010 TGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGG 5952 Query 2525 TTTTTCA--ATTGGGAAAGTGCTTCTTCTTTCGATATTGAGCATTTGGGATATGTTAGGA 2582 |||| | |||| || || |||| ||||| | | ||||| | |||||||||||| | Sbjct 5951 TTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAA 5894 Query 2583 AATAATTCTT 2592 || ||| || Sbjct 5893 AAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8204509328880