Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_002817.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq9745 545 4e-152 >seq9745 Length=7305 Score = 545 bits (604), Expect = 4e-152 Identities = 697/945 (74%), Gaps = 24/945 (3%) Strand=Plus/Minus Query 1656 TTCTTCGCCTCTTCTAGGAATTCTCTATATGAGGATGTTGGG-CCTGGATTGCAGAGGAA 1714 ||||| | || || || || ||| |||| || |||||| ||||||||||| ||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAA 6757 Query 1715 GATAGTGGGAATGCCGCCTTTAACTTGAATTGGCTTTCCGTATTTTGTGTTGCTTTGCCA 1774 ||| ||||| || ||||||||||||| || |||||||||||| || | || ||||| Sbjct 6756 GATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCA 6697 Query 1775 GTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTTTAGATAATGCGGATCAACATCATC 1834 || |||| |||||| | ||||||||| | || |||| |||| |||||||||| | ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1835 AATGACGTTATACCATGCGTCATTAGAATATACTTTTGGACTTAAGTCTAAATGACCACA 1894 ||||||||| ||||| || ||||| || |||||| |||| || ||||||| || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1895 TAAGTAATTATGTGGCCCTAATGACCTAGCCCAAATAGTTTTGCCGGTACGACTATCGCC 1954 ||||||||| ||||| |||||||| |||||||| || ||||| || || | | || || Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1955 TTCTATTACAATACTATTGGGCCTCCAAGGCCGCGCAGCGGCAC-CACACACATTCTCAG 2013 ||||| || ||||| | || | ||||| | ||| ||||| |||| || || || Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACA-ACGTTTTCTT 6458 Query 2014 AGACCCACCCTTCAAGTTCCTCAGGGACTTGATCAAAAGAAGAAGAAGAGAAAGGAGAAA 2073 ||||| ||| ||| ||| || || | | ||| | | || |||||||||| Sbjct 6457 CAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAA 6398 Query 2074 TATAAGGCTCTGGGGGAGCCTGGAAAATCCTATCTAAATTAGTCTTTAAATTATGATACT 2133 ||| | || ||||||||||| ||| |||| ||||||| ||||| ||||| | Sbjct 6397 CATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAAC 6338 Query 2134 GAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATAATAGCCATAGCTGCTTCAGCGGAAC 2193 | ||| | ||||||| ||| ||||||||||||| || | | |||||| || | Sbjct 6337 GTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACC 6278 Query 2194 CTGCGTTTAAAGCGTCGGCGCATGCGTCGTTAGC--ATTCTGG-CAGCCTCCTCTAG--- 2247 | | |||| || || ||| | | || ||||| ||| | | | |||| | ||| Sbjct 6277 CAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTG 6218 Query 2248 CACTTCGTCCGTCGACCTGGAATTCTCCCCATTCAAGTGTGTCTCCATCCTTGTCGATGT 2307 || || ||| || | ||||||||||||||| |||| ||| ||||| | ||| ||||| | Sbjct 6217 CAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATAT 6158 Query 2308 AGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACC 2367 | ||||| |||| |||||| |||||| ||||||| ||||||||||||||||||| ||||| Sbjct 6157 ACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2368 TGGTTGGGGATACCAGGTCGAAGAATCGGTGATTCTTGCAGTTGAATTTTCCCTCGAACT 2427 ||||||| || || || |||||||||| || |||| |||| || | || || ||||| | Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2428 GAATAAGCACGTGGAGATGAGGTTCCCCATTTTCGTGTAGCT-CTCTGCAGATTTTGATG 2486 | ||||||||||||||| ||||||||| ||||| || |||| ||||||| || |||||| Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATG 5979 Query 2487 TATTT----TTTATTGGTGGGTGTTTCAAGGTTT--AATAATTGGGAGAGTGTCTCTTCC 2540 ||||| |||| || |||| ||| |||||| ||||||| ||||| | || || Sbjct 5978 TATTTCTTGTTTACTG--GGGTATTT--AGGTTTTGAATAATT--GAGAGAGCTTCCTCT 5925 Query 2541 TTTGTGAGAGAGCATTTTGGATAAGTGACGAAATAGTTTTTGGAA 2585 ||||| |||||||| | ||||| || | ||| ||||| ||| Sbjct 5924 TTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAA 5880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8664190106580