Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_002981.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq9745 500 1e-138 >seq9745 Length=7305 Score = 500 bits (554), Expect = 1e-138 Identities = 701/980 (72%), Gaps = 20/980 (2%) Strand=Plus/Minus Query 1594 CGAAGGTCGCATTCTTCAGAGCCCAGTTTTTAAGCGCACTGTTTTTCTCTTCATCCAGAT 1653 ||||| ||||| | ||||||||| |||| || ||| || ||||| || ||| Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1654 ACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1713 |||||||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1714 TAATTTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGA 1773 ||| || || || || ||||| | | || ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1774 ACTCTTTAAAGTGCTTTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGCAT 1833 | || ||||| || |||| ||| ||||||| |||| |||||||||||| |||||||||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1834 CATTACTGTACACTTTTGGACTCAGGTCGAGATGACCGCACAAATAATTGTGTGGTCCTA 1893 |||| ||||| |||||| || | || ||||||||| || ||||||||||| |||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1894 GTGACCTGGCCCACATTGTTTTTCCGGTACGACTATCACCCTCAATTACAATACTAATGG 1953 ||| || ||||| |||||||| || || | | ||||| || | || ||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1954 GCCTGATAGGCCGCGCAGCGGCACTGACAACGTTTTCACATGCCCACTCTTCAAGTTCTT 2013 | | | ||||| | ||| |||||| ||||||||||| |||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2014 CTGGAACTTGGTCGAAAGAAGAAGATAAAAAAGGGGAAACATAAACCTCCATTGGAGGTG 2073 | || || | || || | | |||| |||||| |||||||| | | ||||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2074 TAAAAATCCTATCTAAATTTGAATTTAAGTTATGAAATTGTAAAACAAAATCTTTGGGAG 2133 || ||| |||| ||||| | |||||| ||||||| ||||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2134 CTTTCTCTTTTAATATATTGAGGGCCTGTGCTTTTGACCCTGAATTGATTGCCTCGGCAT 2193 ||| || | | ||| | | ||| || ||| ||||| ||||| | || || || | Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2194 ATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCTGATCTTCCATCGACTTGGA 2247 | | || || || ||||| ||| |||| | || ||||||||||| | |||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2248 AAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTAACATCACTT--GA 2305 | |||| ||||| | ||||||| ||||| || || | || |||| | || Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACG-----ACTTCACGTAGGA 6142 Query 2306 GCT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGGTAAG 2362 ||| |||| ||||||| ||||| ||||||||||||| |||||||||||| ||| ||| Sbjct 6141 GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAG 6082 Query 2363 GTCGAAGAATCTATTGTTCCTGCACTGGAATTTTCCTTCGAACTGGATGAGAACATGCAA 2422 ||||||||||| || ||| |||| | | || |||||||| ||||| || || || | Sbjct 6081 ATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Query 2423 GTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTTTTAGAAGTTGG 2482 |||| || | ||| ||| |||||||| || | ||| |||| || ||| Sbjct 6021 ACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGG 5962 Query 2483 GGTTTCGAGATTT--AATAATTGGGAAAGTGCTTCTTCTTTAGTTAGAGAGCACTTGGGA 2540 ||| | || ||| ||||||| || || ||||| ||||| || |||||||| | |||| Sbjct 5961 GGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGA 5904 Query 2541 TAAGTGAGAAAATAATTTTT 2560 || || |||||| |||||| Sbjct 5903 TATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8603956073640