Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_002984.1 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq9745 123 4e-25 >seq9745 Length=7305 Score = 123 bits (136), Expect = 4e-25 Identities = 233/340 (69%), Gaps = 11/340 (3%) Strand=Plus/Minus Query 1568 TCCTGGATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCATA 1627 |||||||||||| || | ||||| || || || ||||||| || || |||||||| || Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1628 TTTACAGTTGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCTT 1687 | | | || |||||||||| |||| |||||| || ||||| || | | | || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAAT------GTTT 6661 Query 1688 TAGGTATTGCGGAGCGACGTCATCAATGACGTTATATTCGGCTTCGTTTGAGTAAACCCT 1747 || || ||||| | |||| |||||||||||| || ||| || || ||| | Sbjct 6660 TAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTT 6601 Query 1748 AGAATTGAAATCCAGGTGACCGC-TAAGATAATTGTGCTTGCCTAACGAACGGGACCACA 1806 | | | ||| ||||||| |||| |||||||| |||||| || | | ||| | Sbjct 6600 TGGGCTTATATCATAATGACCGCATAAG-TAATTGTGTGGGCCTAATGATCTAGCCCATA 6542 Query 1807 TCGTCTTCCCCGTTCTTGAGTCACCTTCTATGATTATACTTCTAGCTCGCATTGGCCGCG 1866 | || ||||| ||||| | |||||||||| | |||||| ||| ||| |||| | Sbjct 6541 TTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCC 6482 Query 1867 CAGCGGCATCCCTCCCAAAATAATCATCAGCCCACTCCTG 1906 ||| |||| ||| ||| | || ||| |||| || || Sbjct 6481 CAGAGGCA---CTCACAACGTTTTCTTCAACCCAGTCTTG 6445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8236211451480