Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003357.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq9745 531 9e-148 >seq9745 Length=7305 Score = 531 bits (588), Expect = 9e-148 Identities = 702/972 (72%), Gaps = 19/972 (2%) Strand=Plus/Minus Query 1615 CTGCATTCTTTATTGCCCACGCTTTGAGTGCTGAATTCTTGTCCTCGTCCAAGTACTCTT 1674 ||||||| | | ||||| | || | |||| ||||| || ||||| | |||||| Sbjct 6850 CTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTT 6791 Query 1675 TATATGATGACGTAGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTT 1734 |||| ||| | || ||||||||||| |||||||| ||||| || || ||||||| || Sbjct 6790 TATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTT 6731 Query 1735 GAATTGGCTTCCCGTA-CTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCT 1793 || ||||| ||||| |||| | || ||||| || |||| ||||||||||||||| Sbjct 6730 AAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATGAATTCC 6672 Query 1794 TTAAAGTGCTTTAGGTAGTGGGGGTCCACGTCATCAATGACGTTGTACCACGCATCATTG 1853 ||||| || |||| || | || || |||| |||||||||||||||||| ||||||||| Sbjct 6671 TTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTG 6612 Query 1854 CTGTACACTTTTGGACTCAGGTCGAGATGACCACATAAATAATTGTGTGGGCCCAATGAT 1913 ||||| |||||| || | || |||||| ||||| |||||||||||||| |||||| Sbjct 6611 TTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGAT 6552 Query 1914 CTGGCCCACATTGTCTTCCCTGTACGACTCTCGCCCTCTATTACAATACTATTAGGTCTC 1973 || ||||| ||||| ||||| || | | ||| || |||| || ||||| |||||| Sbjct 6551 CTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGG 6492 Query 1974 CATGGCCGCGCAG---CATTCCCGTACATTATCAGCAGCCCAAACTTCAAGTTCTTCCGG 2030 |||| | ||| || || | || || || || |||| ||| ||| ||||| Sbjct 6491 TGAGGCCTCCCAGAGGCACTCACA-ACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGG 6433 Query 2031 AACTTGATCAAAAGNNNNNNNNNNNNNNNNNNAAACATAACCTCTAAA-GGAGGCGTAAA 2089 || | | ||| | ||||||| | | |||| | || Sbjct 6432 TACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAA 6373 Query 2090 AATCCTATCTAAATTACNNNNNNNNTTATGAAATTGTAAAACAAAATCTTTAGGGGCTAA 2149 ||| |||| |||||| ||||||| ||||| | ||||||| ||| | Sbjct 6372 TATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTT 6313 Query 2150 TTCCCTAATTACAT-TAAGAGCCTCTGACTTACTGCCGCTGTTAAGTGCCTTGGCGTAAG 2208 ||||||||||| | |||| || ||| ||| || || || || | |||||| Sbjct 6312 TTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAA 6254 Query 2209 CGTCGTTGGCCGATTGCTGACCCCCTCTTG------CAGATCGTCCGTCGATCTGAAACT 2262 | || || |||||||| ||||||||||||| |||||| ||| || ||||| || | Sbjct 6253 CATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATT 6194 Query 2263 CTCCCCACTCGAGGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATT 2322 ||||||| || | || ||||||| ||| |||||||| ||||| |||| ||||||||||| Sbjct 6193 CTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATT 6134 Query 2323 TAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGA 2382 || ||||||| ||||| ||||||||||||| |||||||||||| || || | ||||||| Sbjct 6133 TACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGA 6074 Query 2383 ATCTGTTATTCTTGCACTGGTATTTCCCTTCGAACTGAACAAGCACGTGGAGATGAGGGC 2442 ||||||||||| |||| ||| ||||||||||| || | ||||||||||||| |||| Sbjct 6073 ATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTT 6014 Query 2443 TCCCATCTTCGTGAAGCTCTCTGCAGATTTTAATATATTTCTTGTTGGTTGGGGTGTTTA 2502 || | ||| ||| |||||||| || || || ||||||||||| |||||| |||| Sbjct 6013 CCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTA 5954 Query 2503 TGTTTTG--TAATTGGGAAAGTGCTTCTTCTTTAGTAAGAGAGCACTGTGGGTATGTGAG 2560 |||||| |||||| || || |||| ||||| ||||||||||| || || ||||| || Sbjct 5953 GGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAG 5896 Query 2561 GAAGTAATTTTT 2572 || |||||| Sbjct 5895 AAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8569083738780