Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003418.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq9745 648 0.0 >seq9745 Length=7305 Score = 648 bits (718), Expect = 0.0 Identities = 754/1013 (74%), Gaps = 12/1013 (1%) Strand=Plus/Minus Query 1571 AACGGTTGGGTGAGAAAGACGAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAG 1630 || || |||||||| || |||| |||||||| | | |||||| | || | ||||| | Sbjct 6875 AATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCG 6816 Query 1631 TTCTTTTCCTCGTCTAAAAACTCTTTATAGCTTGCGTTGGGGCCTGGATTGCAGAGGAAG 1690 ||||| || ||||| | |||||||||||| |||| |||||| ||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1691 ATTGTTGGAATGCCTCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAG 1750 ||||| || || || ||||||| || || ||||| ||||| || | || | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1751 TCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTCAGATAATGCGGGTCAACATCATCT 1810 || |||| ||||||||||||||| ||||| ||||| | |||| |||| ||||| | ||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1811 ATAATGTTGAACCACGCATCGTTTGAATACACTTTAGGGCTTAGATCCAAGTGCCCACAT 1870 || | |||| |||| ||||| || ||| ||| ||||||| ||| | || || ||| Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1871 AAATAATTATGTGGCCCCAAGGAACGGGCCCATTGTGTTTTCCCAGTTCTAGACTCCCCC 1930 || ||||| ||||| || || || | |||||| ||||||||||||||||| ||| || Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1931 TCTAGAACTAAACTCAAAGGTCTCTGAGGCCGCGCAGCGGCGTCCATGACGTTCTCCGAC 1990 |||| ||||| ||||| ||||| ||||||| | ||| ||| || ||||| || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 1991 GCCCACTCTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAGATAAAAATGGACAAACA 2050 |||| |||| ||| || || || | | ||| | | |||| ||| ||| ||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2051 TAAACCTCCTGAGGAGGAGTAAAAATCCTATCTAAATTTGAATTTAAATTATGATATTGT 2110 || | | | |||| || ||| |||| ||||| | |||||| ||||| | || Sbjct 6395 TATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT 6336 Query 2111 AAGACATAATCTTTGGGGGCTAATTCTTTAA-GAACTCTAAGAGCCTCTGCCTTACTTCC 2169 || ||||||||| ||| | ||| ||| | ||||||| || ||| ||| || Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCC 6277 Query 2170 TGTGTTAAGTGCTGCCGCGTAAGCGTCATTGGCTGATTGTTGTCCTCCCC------TTGC 2223 | || || ||| | |||||| | ||||| || |||||||| || || | |||| Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2224 AGATCTGCCGTCGATCTGGAATTCCCCCCATTCAAGGGTATCTCCGTCCTTGTCGATATA 2283 |||||| || || ||||||||||| ||||| |||| |||||||||| ||| |||||||| Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2284 GGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCT 2343 ||||| |||| ||||||||||||| ||||||| ||||||||||||||||||| |||||| Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2344 GTTTGTGGCGACCAAGTCGAAGAATCTCTGATTCTGGCACTTGTATTTTCCTTCGAACTG 2403 | ||| | ||| | ||||||||||| | |||| ||| |||| || |||||||| || Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2404 GATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAGCTCACTGCAGATCTTTATGTA 2463 ||| |||||||| ||| ||||||||| ||||||||| || ||||| ||||| ||||| Sbjct 6036 GATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTA 5977 Query 2464 TTTTTTATTTGTTGGGGTTTGTATATTTTG--TAGTTGGGATAATGCCTCTTCTTTATTA 2521 ||| || ||| |||||| | || ||||| || ||| || | || || ||||| || Sbjct 5976 TTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGA--GCTTCCTCTTTTGTA 5919 Query 2522 AGAGAGCATTGTGGATAAGTAAGGAAATAATTTTTGGAATTGATGACAAAACG 2574 |||||||| || ||||| || || ||| |||||| ||| ||| |||||| Sbjct 5918 AGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8581764587820