Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003434.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq9745 643 0.0 >seq9745 Length=7305 Score = 643 bits (712), Expect = 0.0 Identities = 732/978 (75%), Gaps = 16/978 (2%) Strand=Plus/Minus Query 1598 CGAAGATCGCATTCTTTAAAGCCCAATTTTTGAGAGCATTATTCTTCTCTTCATCCAAGA 1657 |||||| ||||| | | |||||| || | ||| ||||| ||||| || | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1658 ACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1717 |||||||||||||||| || |||||||||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1718 TAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1777 ||| || || ||||||||||| | |||| | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1778 ATTCCTTAAAGTGCTTTAGGTAGTGAGGATCTACGTCATCGATGATGTTATACCACGCAT 1837 |||||||||| || |||| || | ||||| |||| ||| |||| ||| ||||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1838 CATTGCTGTAAACTTTGGGGCTTAGATCTAAATGACCGCATAGGTAATTATGAGGCCCTA 1897 ||||| |||| ||| ||||||| ||| |||||||||||| |||||| || || |||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1898 ATGACCTAGCCCACATCGTTTTACCCGTACGACTGTCTCCCTCAATTACTATACTTTGAG 1957 |||| |||||||| || ||||| || || | | || || || | |||||||| || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1958 GCCTCAGAGGCCGCGCAGCGGCATTCATGACATTTTCTGAGACCCATTCTTCAAGTTCTT 2017 | | |||||| | ||| |||| ||| || |||||| ||||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2018 CAGGAACTTGATCAAAAGAAGAAGATAAAAAAGGCGAAACATAAACCTCCAACGGAGGAG 2077 | || || | | ||| | | |||| |||||| |||||||| | | || || |||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATA-TTGCA--GGTGGAG 6380 Query 2078 ---TAAAAATCCTATCTAAATTAGAATTTAAATTATGATATTGAAAAATAAATTTTTCTG 2134 || ||| |||| ||||||| |||||| ||||| | | ||| | | | || || Sbjct 6379 CCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTG 6320 Query 2135 GGAGTTTCTCCTTTATTATAGCCATTGCAGCTTCTTTAGAACCTGCATTTAGGGCTTCTG 2194 || |||| ||| | ||||| | | || ||| |||||| || | |||||||||||||| Sbjct 6319 GGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTG 6260 Query 2195 CAGCAGCATCATTAGCTGTCTGTTGACCTCCTC------GTGCAGATCTCCCATCGATCT 2248 | | |||||||||| | |||||||| |||| ||||||||| ||||| |||| Sbjct 6259 CGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCT 6200 Query 2249 GGAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGTGC 2308 |||| |||||||| || | || ||||||| ||| ||||| || ||||| |||| || || Sbjct 6199 GGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2309 TGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGTTTGGGGAGACCAGGT 2368 |||||||| ||||||| ||||| ||||||||||||| ||||||| |||| ||||| || | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2369 CGAAGAATCGTTGATTCTTGCACTGATATTTCCCTTCGAACTGGATGAGCACATGGAGAT 2428 ||||||||| | |||| |||| || ||||||||||| ||||| ||||| |||||| Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2429 GAGGGCTCCCATCTTCGTGTAGTTCTCTGCAGATCTTGATGTATTTTTTGTTTGTTGGGG 2488 |||| || | ||| || ||||||||| |||||||||||||| |||||| ||||| Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2489 GTTGGAGATTT--AATAATTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCACTTGGGATA 2546 | || ||| ||||||| || || || || ||||| ||||| ||||| | |||||| Sbjct 5959 TATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2547 AGTGAGAAAATAATTTTT 2564 || |||||| |||||| Sbjct 5901 TGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8597615649120