Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003504.1 Length=2603 Score E Sequences producing significant alignments: (Bits) Value seq9745 120 5e-24 >seq9745 Length=7305 Score = 120 bits (132), Expect = 5e-24 Identities = 245/362 (68%), Gaps = 8/362 (2%) Strand=Plus/Minus Query 1486 TTAAGCGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGCCCCCTCTCCTGGA 1545 |||| | |||||| | |||| ||| || || ||||||||||| | ||||||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGA 6768 Query 1546 TTGCACAGCACGATTGATGGTATCCCGCCTTTAATTTGAACCGGCTTTCCATATTTGCAG 1605 ||||| || | ||||| || ||||||||||||| || || |||||||| ||| | | Sbjct 6767 TTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTA 6708 Query 1606 TTGGATTGCCAGTCTCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGGTAT 1665 || | ||||| || |||| |||||| || ||||| || | | | |||| || Sbjct 6707 TTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAAT------GTTTTAAATAA 6654 Query 1666 TGCGGACTGATGTCATCGATGACGTTATACTCAACCTCGTTAGAGTACACTGAAGAATTG 1725 ||||| | || ||| |||||||| ||| | || || |||| | | | Sbjct 6653 CGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTT 6594 Query 1726 AAATCCAGGTGTCCAC-TAAGATAATTGTGTGGTCCTAATGCACGAGCCCACATGGTTTT 1784 | ||| || || | |||| ||||||||||| ||||||| | |||||| || ||||| Sbjct 6593 ATATCATAATGACCGCATAAG-TAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1785 TCCGGTACGTGAACCACCTTCGACGATGATACTAATAGGTCTCTCCGCCCGCGCAGCGGC 1844 || || | | ||||||| || | ||||| ||||||| | | || | ||| ||| Sbjct 6534 CCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 1845 AC 1846 || Sbjct 6474 AC 6473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8144275295940