Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003556.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq9745 425 9e-116 >seq9745 Length=7305 Score = 425 bits (470), Expect = 9e-116 Identities = 690/983 (70%), Gaps = 29/983 (3%) Strand=Plus/Minus Query 1770 CGAAGGTTGCATTTTTAACTGCCCAGGCTTTTAATGCGGAATTCTTTTCTTCGTCCAGAA 1829 ||||| ||||||| | | ||||||| || | || | ||||| |||||||| |||| Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1830 ATTCCGTATATGAAGACGTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTT 1889 | || |||| || | || ||||||||||| ||||||||||| || || || |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1890 TAATTTGAATTGGCTTCCCGTA-CTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1948 ||| || || ||||| ||||| |||| | || ||||| || |||| |||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1949 AATTCTTTAAAATGCTTTAGATAGTGGGGGTCTACATCATCAACGACGTTGTACCATGCG 2008 ||||| |||||||| |||| ||| | || || || | ||||| |||||||||||| || Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 2009 TCGTTGCTGTAGATCTTCGGACTCAGATCCAGATGACCGCATAGGTAGTTATGTGGACCT 2068 || ||| |||| | || || || | ||| ||||||||||| ||| || ||||| ||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 2069 AACGACCTAGCCCACATCGTTTTTCCTGTCCTACTGTCACCCTCTATGACAATACTAATC 2128 || || |||||||| || ||||| || || ||| ||||| |||| || ||||| || Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Query 2129 GGTCTCCATGGCCGCGCAGAAG-ACT--TCACGTTTTCTGCAGCCCATTCCTCAAGTTCT 2185 |||| |||| | |||| | ||| ||||||||| || |||| || | ||| Sbjct 6497 GGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC 6438 Query 2186 TCAGGAACTTGATCAAATGAAGAACTAGA---AAAAGGACAAACAAAAACCTCCAATGGA 2242 || || || | | |||| | ||| || ||||||| ||||| | | | || || Sbjct 6437 TCCGGTACGTTGTTAAAT---GTACTGGATACAAAAGGAGAAACATATA-TTGCA--GGT 6384 Query 2243 GGAGC---AAAAATCCTATCTAAATTTGAATTTAAATTATGAAATTGTAAAACAAAATCT 2299 ||||| || ||| |||| ||||| | |||||| ||||||| ||||| | ||||| Sbjct 6383 GGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCT 6324 Query 2300 TTGGGAGCTTTCTCCCTTAATATATTGAGTGCCGATGACTTTGATCCTGAGTTGATTGCC 2359 || || ||| ||||| | ||| | | || | || || || || || || | || Sbjct 6323 TTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCT 6264 Query 2360 TCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCCC------TAGCTGATCTTCCATCG 2413 || || || | || || || ||||| ||| || | | || ||||||||||| Sbjct 6263 TCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCC 6204 Query 2414 ACTTGGAAAACTCCAAAATCAAGGATGTCTCCGTCTTTCTCCATGTAGGACTTGACATCT 2473 | ||||| |||| |||||| | ||||||| ||||| || || ||||| || | Sbjct 6203 ATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT-- 6146 Query 2474 GACGAGCT---TTTAGCCGCCTGAATGTTCGGATGGAAATGTGCTGACCTACTTGGGGAT 2530 | ||||| |||| | |||| ||||| ||||||||||||| |||||| |||| || Sbjct 6145 -AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAG 6087 Query 2531 ACGAGGTCGAAGAATCGTTGATTTTTGCATTGGTATTTTCCTTCGAATTGGATGAGGATG 2590 || || |||||||||| | ||| ||||| ||| || |||||||||||||| || | | Sbjct 6086 ACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACG 6027 Query 2591 TGGAGATGAGGGCTCCCATCTTCATGTAATTCACGGCAGATTCTTATGAAtttttttGAT 2650 |||||| |||| || | |||||| ||| | ||| || | ||| |||| || | Sbjct 6026 TGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTT 5967 Query 2651 ATCGGTGTTTGGAGTTGCTTGATTTGTGAGAGTGCTTCTCCTTTAGTAAGAGAGCAGTGT 2710 | || || | || | | || |||||| ||||| |||| |||||||||||||| Sbjct 5966 ACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGG 5907 Query 2711 GGGTATGTGAGGAAATAATTCTT 2733 || ||||| || ||| ||| || Sbjct 5906 GGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8661019894320