Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003609.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq9745 378 1e-101 >seq9745 Length=7305 Score = 378 bits (418), Expect = 1e-101 Identities = 687/1002 (69%), Gaps = 27/1002 (3%) Strand=Plus/Minus Query 1756 GAAGGTTGCATTTCTAATTGCCCAGGCCTTTAGGGCAGCATTCTTCTCCTCGTCTAAATA 1815 |||| ||||||| | | ||||||| ||| | || || ||||| || ||||| | | | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1816 TTCTGTGTATGATGACGTTGGG-CCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTT 1874 ||| | || ||| |||||| ||||||||||| ||||||||||| || || || |||| Sbjct 6795 CTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1875 TAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1934 ||| || || || || ||||| | | || ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1935 ACTCTTTAAAGTGCTTTAGATAGTGGGGATCCACGTCATCAATGACGTTGTACCATGCCT 1994 | || ||||| || |||| ||| | ||||| |||| |||||||||||||||||| || | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1995 CGTTGCTGTAAACCTTGGGGCTTAAGTCAAGGTGGCCGCAAAGGTAATTATGACGTGGAT 2054 | ||| |||| || ||||||| ||| || ||||| | |||||| || ||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTG---TGGGC 6560 Query 2055 GTAGAGACCTGGCCCACATGGTCTTCCCTGTCCTGCTATCCCCCTCTATCACAATACTCA 2114 || || || ||||| || || ||||| || || || || |||| || ||||||| Sbjct 6559 CTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCA 6500 Query 2115 TGGGCCTCCACGGCCGCGCAGCGGAATCCCTGACGTTCTCGGCAGCCCATTCCTCAAGTT 2174 | || | |||| | ||| || | | ||||| || || |||| || | ||| Sbjct 6499 TAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAA 6440 Query 2175 GCTCTGGAACTTGATCAAAGGAAGAAGATAAAAAAGGAGAAACAAATTCCTCCAACGGAG 2234 ||| || || | | ||| | | |||| ||||||||||||| || | || || | Sbjct 6439 TCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATAT-TGCA--GGTG 6383 Query 2235 GAGCA---AAAATCCTATCTNNNNNNNNNNNNNNNNNNTGAAATTGTAAAACAAAATCTT 2291 |||| || ||| |||| ||||| ||||| | |||||| Sbjct 6382 GAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTT 6323 Query 2292 TGGGAGCTTTCTCCCTTAATATAGACAAGGCCGATGACTTGGACCCTGAGTTGATTGCCT 2351 | || ||| ||||| | ||| ||||| | || || ||||| || || | || | Sbjct 6322 TTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTT 6263 Query 2352 CGGCATATGCGTCGTTGGCAGACTGGCAACCTCCTCTAG------CTGATCTTCCATCGA 2405 | || || | || || || || || ||| ||||| | | ||||||||||| | Sbjct 6262 CTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCA 6203 Query 2406 CCTGGAAAATTCCAAAATCAACGACGTCCCCGTCTTTTTCCATGTAGGCCTTGACGTCCG 2465 |||||| ||| |||||| || |||| || || || || | ||| |||| Sbjct 6202 TCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT--- 6146 Query 2466 ACGAGCTC---TTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTAGTTGGGGATA 2522 | ||||| ||| ||||||| ||||| ||||||||||||| |||||| ||||| || | Sbjct 6145 AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGA 6086 Query 2523 CGAGATCGAAGAATCGTTGATTTGTGCATCTGTATTTTCCTTCGAATTGCAGGAGGACGT 2582 | ||||||||||||| | ||| |||||| |||| || ||||||||||| | || |||| Sbjct 6085 CAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGT 6026 Query 2583 GGAGATGAGGGCTCCCATCTTCGTGTAATTCTCTGCAAATTCTGATGAATAATTTATTGG 2642 ||||| |||| || | ||| || |||||||||||| ||||| || || || Sbjct 6025 GGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTA 5966 Query 2643 TTGGTGTATCTAGGGCTTT--TAATTGGGAAAGTGCCTCTTCTTTGGTAAGAGAGCAGTG 2700 ||| |||| |||| || |||||| || || | || ||||| |||||||||||||| Sbjct 5965 CTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTG 5908 Query 2701 TGGGTAAGTGAGGAAGTAATTTTTAGAATTTATTTGAAAACG 2742 || || || || || |||||||||| || ||||||| Sbjct 5907 GGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8632487983980