Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003664.1 Length=2622 Score E Sequences producing significant alignments: (Bits) Value seq9745 280 2e-72 >seq9745 Length=7305 Score = 280 bits (310), Expect = 2e-72 Identities = 620/918 (68%), Gaps = 45/918 (5%) Strand=Plus/Minus Query 1557 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACCGGCTTTCCGTAC 1616 || ||||||||||| | ||| || || || ||||||| || || ||||||||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1617 TTGCAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGTTTT 1676 | | || | |||||||| |||| |||||| || ||||| || | || |||| Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATG------TTTT 6660 Query 1677 AGATAATGCGGTGCGACATCATCAATGACGTTATACTGCACATCGTTTGAGTAGACCTTT 1736 | |||| |||| | || | |||||||||||| ||| |||| || ||| ||| Sbjct 6659 AAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 1737 GAATTGAAATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGTACGTGCCCACATT 1796 | | | ||| ||||| | |||||||| || | || |||| | ||||| ||| Sbjct 6599 GGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATT 6540 Query 1797 GCCTTCCCCGTCCTTGAATCACCCTCGATTATTATACTGATAGGTCTCTCCGGCCGCGCA 1856 | ||||| || || | ||||| || | | |||||| ||||||| | |||| | || Sbjct 6539 GTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCA 6480 Query 1857 GCGGCATCTCTCCCGAAATAATCATTGACCCAGTCTTGCA---TCTCGACAGGAACGTTA 1913 | |||| ||| | | | || | ||||||||||| | |||| || ||||| Sbjct 6479 GAGGCA---CTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCC---GGTACGTT- 6427 Query 1914 GTGAACGATGAGAGGGG---AAACGGAGGAACCCAAGGTTC---TGGAGCCTTAACGAAA 1967 || || ||| || ||| |||| ||| | | | |||||||| | | Sbjct 6426 GTTAA--ATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATC 6369 Query 1968 ATACGCTCTAGATTAG-ATTTAATATTATGATGTTGAAGCACGAAATCTTTGGGTTGTTC 2026 ||| || | ||||| ||||||| | |||| | | ||||||| || ||| Sbjct 6368 ATA---TCCAAATTAGCATTTAATCT-ATGAAAACGTAAATAATAATCTTTTGGGCGTTT 6313 Query 2027 CTCTCTTAATATATTGAGTGCTTCCATGACTGATCCTGCGTTGAGAACCTTGGCGTACGT 2086 || || | ||| | | ||| | | || || | || || | | ||||| Sbjct 6312 TTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAAC 6253 Query 2087 GTCGTTGGCAGATTGCTGACCTCCTCTTG------CTGATCTTCCATCGATCTGGAAAAC 2140 || || || ||||| ||||| ||||||| | ||||||||||| |||||||| | Sbjct 6252 ATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTC 6193 Query 2141 TCCATGATCAACGAAGTCTCCGTCTTTCTCCACGTATGATTTGACGTCTGAGGAGCTC-- 2198 ||| ||||| ||||||| ||||| | || || || |||| ||||||| Sbjct 6192 TCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGAGCTGGA 6136 Query 2199 -TTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGGTCGAA 2257 ||| ||||||| ||||| ||||||||||||| |||||||||||| || || || ||||| Sbjct 6135 TTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAA 6076 Query 2258 GAACTTGTTGTTCTTGCAGTTGTATTTACCTTCGAACTGGATGAGCACGTGGAGATGAGG 2317 ||| |||| ||| |||| |||| || |||||||| ||||| |||||||||||| |||| Sbjct 6075 GAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGG 6016 Query 2318 TTCCCCATTTTCGTGTAGTTCTCTTGATACACGAATGAATAATTTGTTTGTTGGTGTGTT 2377 ||||| ||||| || |||||| | | ||| || |||||| ||| || || Sbjct 6015 TTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATT 5956 Query 2378 CAGAGCT--AGTAATTGGGAAAGTGCTTCTTCTTTGGAAAGAGAGCAGTGAGGATATGTT 2435 || | | ||||| || || ||||| ||||| | |||||||||||| ||||||||| Sbjct 5955 TAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTT 5898 Query 2436 AGAAAATAATTTTTGGAA 2453 |||||| |||||| ||| Sbjct 5897 AGAAAAATATTTTTAGAA 5880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8204509328880