Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003722.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq9745 468 9e-129 >seq9745 Length=7305 Score = 468 bits (518), Expect = 9e-129 Identities = 689/973 (71%), Gaps = 22/973 (2%) Strand=Plus/Minus Query 1599 CGAAGATCGCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGA 1658 |||||| ||||| | | |||||| |||| ||||| || || ||||| || | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1659 ATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTT 1718 | |||||||| || |||||||||||||||||||| || ||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1719 TAATTTGAACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGA 1778 ||| || || ||||| ||||| | |||| ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1779 ATTCTTTAAAGTGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCAT 1838 |||| ||||| || |||| || ||||||| |||| |||||||||||| ||||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1839 CATTATTGTACACCTTAGGGCTTAGATCTAAATGACCACACAAGTAATTATGTGGTCCCA 1898 |||| |||||| || ||||||| ||| ||||||| || |||||||| ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1899 ATGACCTGGCCCACATCGTCTTCCCTGTTCTACTGTCACCCTCTATGACTATACTCATGG 1958 |||| || ||||| || || ||||| |||||| ||||| |||| ||||||||||| | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1959 GTCTCAATGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTCGTCAAGTTCTT 2018 ||| |||| | ||| |||||| || || || || || |||| || | ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2019 CTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAA--ATGTATTCCTCTATCGGGGG 2076 | || || | | || | | |||| |||||||||| || |||| | || || Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGC-----AGGTGG 6382 Query 2077 AG---TAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAATACAAAATCTTT 2133 || || ||| |||| ||||||| |||||| ||||||| |||| | ||||||| Sbjct 6381 AGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTT 6322 Query 2134 AGGGGCCTTTTCCCTTAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTC 2193 ||| |||||||| | ||| | | ||| | | ||| ||||| ||||| | || || Sbjct 6321 TGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTC 6262 Query 2194 GGCATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCCGATCTTCCATCGAT 2247 || || | || || || ||||| ||| |||| | || ||||||||||| || Sbjct 6261 TGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCAT 6202 Query 2248 CTGGAAAATTCCATGATCAAGGACGTCTCCGTCTTTTTCCATGTATGTTTTAACATCTGT 2307 |||||| ||| ||||| ||||||| || || || || | || || | Sbjct 6201 CTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---A 6145 Query 2308 TGAGCT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCGGGTTGGGGATGT 2364 ||||| |||| ||||||| ||||| ||||||||||||| ||| | |||||| || Sbjct 6144 GGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGAC 6085 Query 2365 GAGATCGAAGAATCTTTGGTTTTTACACTGGAATTTTCCTTCGAATTGGATGAGGACATG 2424 |||||||||||||| | || | || | | || |||||||||||||| || || || Sbjct 6084 AAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTG 6025 Query 2425 CAGGTGAGGAGTCCCATCTTCATGGAGTTCCCTGCAGATTCTGATGAATAATTTATTAAT 2484 || |||| || | |||||| ||| ||||| || ||||| || || || | Sbjct 6024 GAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTAC 5965 Query 2485 TGGTGTTTCTAGGGCTTTAATTTGGGAAAGTGCCTCTTCTTTAGTGAGAGAACAATGTGG 2544 ||| || | |||| || ||| || || || || ||||| || ||||| || || || Sbjct 5964 TGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGG 5905 Query 2545 GTATGTGAGGAAA 2557 ||||| || ||| Sbjct 5904 ATATGTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8588105012340