Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003803.1 Length=2800 Score E Sequences producing significant alignments: (Bits) Value seq9745 464 1e-127 >seq9745 Length=7305 Score = 464 bits (514), Expect = 1e-127 Identities = 721/1021 (71%), Gaps = 18/1021 (2%) Strand=Plus/Minus Query 1625 GAACAATGGCTCGTGGAGGGTGATGAAGGTTGCATTCTTTAAAGCCCAGGCTTTAAGGGA 1684 ||| ||||||| | |||| |||| |||||| | | |||||||| |||| | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAG- 6821 Query 1685 CTG-GTTCTTTTCCTCGTCCAGAAACTCTTTATATGATGATGTCGGTCCTGGATTGCATA 1743 ||| |||||| || ||||| |||||||||||||| ||| | |||||||||||||| | Sbjct 6820 CTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAA 6761 Query 1744 GGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTACTTGGTATTGCTTT 1803 ||||||| ||||| || |||||||||| || || ||||| ||||| | |||| | Sbjct 6760 GGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACT 6701 Query 1804 GCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTGAGGTAATGGGGGTCGACGT 1863 |||| || |||| ||||||||||||||| || || || || | ||| | || || |||| Sbjct 6700 GCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGT 6641 Query 1864 CATCAATGACGTTGTACCATGCGTCGTTGCTGTAAACCTTTGGACTGAGATCCAAATGTC 1923 |||||||||||||||||| || || ||| |||| ||||| || | ||| |||| | Sbjct 6640 TATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGAC 6581 Query 1924 CACATAAGTAGTTGTGTGGTCCCAGAGATCGGGCCCACATCGTCTTCCCTGTCCTACTAT 1983 | |||||||| |||||||| || | |||| ||||| || || ||||| || ||| | Sbjct 6580 CGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCT 6521 Query 1984 CGCCCTCGATGACGATACTACTCGGTCTCCATGGCCGCGCAGCGAAACCCATCACGTTCT 2043 | || || | || ||||| | |||| |||| | ||| | || || ||||| | Sbjct 6520 CACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTT 6461 Query 2044 CGGAAACCCAGTCTTCAAGTTCCTCAGGAACATGAGTGAAAGAAGAAGAAAGAAAGGGAG 2103 | ||||||||||| ||| ||| || || | | || | | || | ||| |||| Sbjct 6460 CTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAG 6401 Query 2104 AA--ATATAAGGAATCGGAGGCTCCTGAAAAATCCTATCTAAATTGCTATTTAAATTATG 2161 || ||||| | | || || |||| || ||| |||| ||||| |||||| |||| Sbjct 6400 AAACATATATTGCA--GGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATG 6343 Query 2162 AAACTGTAAAACAAAATCCTTTGGGGCTAGTTCCCGGATTA-CATTAAGAGCCTCTGTTT 2220 ||| ||||| | |||| |||||| | ||||| |||| | |||| || |||||| Sbjct 6342 AAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTT 6284 Query 2221 TACTTGCTGCGTTAAGAGCCTTGGCGTAAGCGTCATTGGCGGATTGTTGTCCGCCGC--- 2277 || | | || || || | |||||| | ||||| || |||||||| || || | Sbjct 6283 TAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTG 6224 Query 2278 ---GAGCAGATCGTCCGTCGATCTGAAACTCGCCCCATTGGATGGTGTCTCCGTCCTTGT 2334 ||||||| ||| || ||||| || || ||||| | || || ||||||| ||| | Sbjct 6223 TAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCT 6164 Query 2335 CCAAATAGGACTTGACGTCAGAACTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTG 2394 | | ||| ||||| |||| || ||||||||| ||||||| ||||||||||||||||||| Sbjct 6163 CGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTG 6104 Query 2395 TTGACCTGGAAGGGGATATGAGGTCGAAGAATCGTTGGTTGGTACAATTGTACTTGCCCT 2454 ||||||||| || || | || |||||||||| | || || || ||||||| || | Sbjct 6103 TTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTT 6044 Query 2455 CGAACTGAATGAGGGCATGCAAATGAGGTTCCCCATTTTCATGGAGTTCTCTGCAGATCT 2514 |||| || || || | || | | ||||||||| |||||||| ||||||||| |||| Sbjct 6043 CGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCT 5984 Query 2515 TGATGAACAATTTATTTGTTGGGGTTTGGAGTTGTCG--GAGTTGATCTAATGCCGCTTC 2572 ||||| | || ||| |||||| | || | | | | |||| | || | || Sbjct 5983 TGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGA--GAGAGCTTCCTC 5926 Query 2573 TTTCGAGAGAGTGCATTTCGGATACGTGAGGAAATAATTTTTGGCTTTTATGCTAAAACG 2632 ||| | |||| ||| | ||||| || || ||| |||||| | |||| |||||| Sbjct 5925 TTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Query 2633 A 2633 | Sbjct 5865 A 5865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8763214454750