Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003825.1 Length=2861 Score E Sequences producing significant alignments: (Bits) Value seq9745 399 4e-108 >seq9745 Length=7305 Score = 399 bits (442), Expect = 4e-108 Identities = 689/990 (70%), Gaps = 33/990 (3%) Strand=Plus/Minus Query 1831 CCAGGGTTGCAAAGGACTATTGATGGGATGCCACCTTTAATTTGAACTGGCTTTCCATAT 1890 || || |||||||||| |||| || || || ||||||| || || |||||||| ||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1891 TTACAGTTTGACTGCCAGTCTCTCTGGGCCCCAATCAGCTCTTTCCAGTGCTTTAACTTT 1950 | | || ||||||| || || | |||||| || | || || | || ||||| Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA---- 6658 Query 1951 AAATAGTGCGGTGTGACGTCATCAATGACGTTATACAAGGCACTATTTGAATACACTCTG 2010 ||| |||| |||| |||||||||||| ||| ||||| ||| ||| | | Sbjct 6657 --ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 2011 CTGTTAAAATCTAAGTGGCCGGATAAATAATTATGTGGGCCCAAGCTCCTAGCCCACATT 2070 | | | ||| | || ||| |||| ||||| |||||||| || |||||||| ||| Sbjct 6599 GGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATT 6540 Query 2071 GTCTTGCCGGTCCTAGACTCACCCTCAATTATAATACTTTTATATCTCATAGGCCGCGCA 2130 || || || || |||| |||||| || | | ||||| || || ||||| | || Sbjct 6539 GTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCA 6480 Query 2131 GCGGCACTAACTCCAAAATAATCATCCGCCCATTCTTGCATATCTTCAGGAACGTTAGTA 2190 | |||||| || || | || || |||| ||||| | | || || ||||| || Sbjct 6479 GAGGCACTCAC---AACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTA 6423 Query 2191 AATGAAGATAATTGAAACGGAGGGACAAAC---GGAGTTGGTGCCGGAGTAAAAATCCTA 2247 |||| | || ||| |||| ||| | | || ||| ||| | || ||| || Sbjct 6422 AATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGG---AATATCATA 6366 Query 2248 TCTAAGTTAGAAACTAAATTATGATAACAAAATAAAAAATCTTTAGGCAATTTTTCTTTT 2307 || || |||| | ||| ||||| ||| || || ||||||| || |||||| | Sbjct 6365 TCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTA 6306 Query 2308 ATAATTTGTAGAGCTTCCTCTTTTGAGGAACGGTTTAGGGCCTCTGCACATTCGTCGTTA 2367 || || | || ||| | ||| || | |||||||| ||||| | | || ||| Sbjct 6305 ATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTA 6246 Query 2368 GCTGTCTGCTGGCCTCCTCTAG------CAGATCTAGCGTCAATCTGGAATTCTCCCCAT 2421 || | || || || ||||| | ||||||| | || ||||||||||||||||| Sbjct 6245 GCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAA 6186 Query 2422 TCGATAGTGTCTCCGTCCTTGTCGACGTAGGAGTTGACGTCGGAGCTGGATTTAGCTCCC 2481 || || || ||||||| ||| |||| || || || |||| ||||||||||||| ||||| Sbjct 6185 TCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCC 6126 Query 2482 TGTATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGA 2541 |||||||| |||||||||||||||||||||||||| || || || |||||||||| | | Sbjct 6125 TGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTA 6066 Query 2542 TTTTTGCAGTTGAATTTCCCTTCGAATTGTATAAGCACATGGAGATGAGGTTCCCCATTT 2601 || |||| || | |||||||||||||| |||||||| |||||| ||||||||| ||| Sbjct 6065 TTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTT 6006 Query 2602 TCGTGTAGC-TCTCTAGCTACT-TTTATGTATTTTTTATTTGTTGGTGTTTGTAGCCTTT 2659 || || ||| ||||| || | | || |||||||| || ||| ||| || | ||| ||| Sbjct 6005 TCATG-AGCTTCTCT-GCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTT 5948 Query 2660 GA--AGTTGGTCGAGAGCTTCTTCTTTGGATAAAGAACAATTGGGATATGTGAGGAAATA 2717 || | ||| ||||||||| ||||| | | ||| || | ||||||||| || ||| Sbjct 5947 GAATAATTG--AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAAT 5890 Query 2718 GTTCTTGGCTGCTATTTGAAAACGTTTGGGATTGGATGGCATATTTGTAAATATGTGTTG 2777 || || | | || ||||||| | | | | |||||||||||||| || || Sbjct 5889 ATTTTTAGAAGAAATGCGAAAACG---AGAACTCGTTGGCATATTTGTAAGTAAATGGAT 5833 Query 2778 GTTACCAATTGGTTTGCTTTTTAATTCTCT 2807 || ||||||| || | || ||| |||| || Sbjct 5832 GTCACCAATTTGTAT-CTCTTTGATTCCCT 5804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8956543959900