Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003828.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq9745 533 3e-148 >seq9745 Length=7305 Score = 533 bits (590), Expect = 3e-148 Identities = 719/999 (72%), Gaps = 8/999 (1%) Strand=Plus/Minus Query 1595 GAACAATGGCTGGTGGATGGTGACGAAGATTGCATTCTTAGTAGCCCAGTTTTTTAATGC 1654 ||| ||||||||| || | |||||| |||||| | ||||||| || | || Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1655 TTGAtttttttCTTCGTCGAGATATTCTTTAAATGATGATTGTGGGCCTGGATTGCATAG 1714 | || || |||||||| ||| | |||||| | ||| | || ||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1715 GAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTGCCATACTTTGTGTTGCTTTG 1774 |||||| ||||| || || ||||||| || || |||||| || || || | || || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1775 CCAATCTCTTTGGGCCCCCATAAATTCTTTAAAGTGTTTTAAATAATGCGGGTCGACGTC 1834 |||||| |||| ||||||||| ||||| ||||| |||||||||||| |||| || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1835 ATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTTTGACTGAGGTCAAGATGGCC 1894 |||||||||||| ||||| |||| |||| |||| |||| | || | ||| ||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1895 GCACAAATAATTATGTGGGCCTAATGAACGGGCCCACGTTGTCTTTCCTGTCCGGCTGTC 1954 ||| || ||||| |||||||||||||| | ||||| |||| || || || | || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1955 ACCCTCAATCACTATACTCACCGGTCTCCAAGGCCGCGCAGCGGCATCCATGACGTTCTC 2014 ||| || | |||||||||| |||| ||||| | ||| |||| || ||||| || Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2015 GGAAACCCAGTGTTCAAGTTCATCAGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGA 2074 |||||||| || ||| || || || | | || | | |||| ||||||||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2075 AACATAAGGTGCCGGAGGCACCTGGAAAACCTTATCTAAATTACTATTTATATTATGAAA 2134 |||||| ||| || || ||||||| | | |||| |||||| ||||| ||||||| Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 2135 ATGTAGAACGTAATCTCTAGGCGCTAATTCTTTAATTACATCAAGAGCCTGC-GACTTAC 2193 | ||| | |||||| | || | ||| |||||| || | || |||| | ||| Sbjct 6339 ACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA-AGGCTGCTGTTTTAG 6281 Query 2194 TTCCTGCGTTAATTGCCTTTGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCCC------ 2247 || | || | || | ||||||| | || || || | ||||| || || | Sbjct 6280 ACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAG 6221 Query 2248 TAGCAGATCGTCCGTCGATCTGGAAAGTACCCCATTCAAGAACATCTCCGTCCTTGTCGA 2307 | ||||||| ||| || |||||||| ||||| |||| |||||||| ||| |||| Sbjct 6220 TTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGA 6161 Query 2308 TATAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTG 2367 |||| ||||| |||| |||||| |||||| ||||||| ||||| ||||||||||||| || Sbjct 6160 TATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTG 6101 Query 2368 ACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTGGTACAATTGTATTTTCCTTCGA 2427 |||||||||| || || || |||||||||| | ||| || || |||| || ||||||| Sbjct 6100 ACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGA 6041 Query 2428 ATTGGATGAGAATATGGAGATGAGGTTCCCCATTTTCATGTAGTTCTCTGCAAATTTTGA 2487 ||||||| || | |||||| ||||||||| |||||||| |||||||||||| |||| Sbjct 6040 ATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGA 5981 Query 2488 TGAATAATTTGTTTGTGGGTGTTTGTAGGTTTGTTATTTGGGAAAGTGCATTTTCTTTTG 2547 || || |||||| || || | ||||||| || || || || | ||||||| Sbjct 5980 TGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTG 5921 Query 2548 TTAAATCACATTTGGGATATGTAAGGAAATAATTTTTAG 2586 | | | || | ||||||||| || ||| |||||||| Sbjct 5920 TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8683211380140