Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003830.1 Length=2634 Score E Sequences producing significant alignments: (Bits) Value seq9745 466 3e-128 >seq9745 Length=7305 Score = 466 bits (516), Expect = 3e-128 Identities = 711/1007 (71%), Gaps = 33/1007 (3%) Strand=Plus/Minus Query 1530 TGCGTTTTCCTCTTTGTTGAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAG 1589 |||||| | |||| || || || |||||||| || | || ||||||||||| Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1590 CACGATTGCTGGGATCCCTCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTGGATTG 1649 | ||||| || ||||| ||||||| || || ||||| ||||| | | ||| | || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1650 CCAGTCCTTCTGGGCCCCCAGAAGTTCCTTCCAGTGCTTTAACTTTAGATAGTGCGGTGC 1709 ||| || | | |||||||| | |||||| | || ||||| ||| |||| | Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGGATC 6646 Query 1710 GACGTCATCAATGACGTTATACTCCACTTCGTTCGAGTAGACCTTTGGGTTGAAGTCCAG 1769 |||| |||||||||||| ||| | || || ||| |||||| | | || Sbjct 6645 AACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATA 6586 Query 1770 ATGACCACTTAGGTAATTATGTGGGCCTAATGCCCTAGCCCACATCGTCTTCCCTGTCCT 1829 |||||| | || |||||| ||||||||||||| |||||||| || || ||||| || || Sbjct 6585 ATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCT 6526 Query 1830 CGAATCACCTTCCACGATGATACTAATAGGTCTTTCCGGCCGCGCAGCGGAACCTCTTCC 1889 | |||||||| || | ||||| ||||||| | |||| | ||| || || | | Sbjct 6525 AGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCAC 6469 Query 1890 AAAATAATCATCCGCCCACTCTTGCATCTCGTCTGGAACGTTAGTGAACGAAGAGAGTTG 1949 || | || || |||| ||||| | || || ||||| | || | | | | Sbjct 6468 AACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC 6409 Query 1950 AAACGGAGGAACCCACCGTTCCGG---AGCCTTTGCGAATATTCTCTCTAGGTTGGAGCG 2006 ||| |||| ||| | | | || ||||| |||||| | || | || ||| Sbjct 6408 AAAAGGAGAAACATATATTGCAGGTGGAGCCTG---GAATATCATATCCAAATT--AGC- 6355 Query 2007 GATGT----TATGATTATGCAGGACAAAATCTTTTGGCTGCTCTTCCTTTAAAACCGCCA 2062 || | ||||| | | | | |||||||||| | | |||| | | | | | | Sbjct 6354 -ATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA 6296 Query 2063 TGGCAGATTGAACAGATCCTGCATTCAACGCCTTGGCATATGAGTCGTTAGCAGATTGCT 2122 ||| | | ||| || | ||| | || | || || || ||||| ||||| | Sbjct 6295 AGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTT 6236 Query 2123 GACCTCCTCTAG------CTGATCTGCCGTCGATCTGGAATTCTCCCCACTCAACTGTAT 2176 |||| ||||| | | ||||| || || ||||||||||||||||| |||| ||||| Sbjct 6235 GACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTAT 6176 Query 2177 CTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCG 2236 |||||| ||| ||||| || ||||| |||| ||||||||||||| ||||||||||||| | Sbjct 6175 CTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTG 6116 Query 2237 GATGGAAATGTGCTGACCGGGTTGGGGAGACCAGATCGAAGAATCTGTTATTCGTGCACT 2296 |||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||| Sbjct 6115 GATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATG 6056 Query 2297 GGTACTTCCCTTCGAATTGGATGAGAACGTGGAGATGAGGCTCCCCATTCTCATGTAACT 2356 ||||||||||||||||||||| || ||||||||| |||| |||| || ||||| | Sbjct 6055 TGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTT 5996 Query 2357 CTCTGCAAATCTTGATGTATTTCTTGTTAACTGGCGTTTTTAGGGTTTG--TAATTGGGA 2414 |||||||||||||||||||||||||||| ||||| || |||||| |||| |||||| || Sbjct 5995 CTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGA 5936 Query 2415 AAGTGCTTCTTCTTTGCTAAGAGAGCACTGGGGATATGTGAGGAAATAGTTTTTGGCTGA 2474 || |||| ||||| |||||||||| ||||||||||| || ||| ||||| | || Sbjct 5935 GAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGA 5878 Query 2475 GACTTTGAAACGTTTAACCGATGGCATTTTTGTAATAAGATGGGTGT 2521 | ||||| | || |||||| ||||||| | |||| ||| Sbjct 5877 AATGCGAAAACGAGAACTCGTTGGCATATTTGTAAGTAAATGGATGT 5831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8242551876000