Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003856.1 Length=2607 Score E Sequences producing significant alignments: (Bits) Value seq9745 300 3e-78 >seq9745 Length=7305 Score = 300 bits (332), Expect = 3e-78 Identities = 632/934 (68%), Gaps = 29/934 (3%) Strand=Plus/Minus Query 1528 AAGGAAATCTTTATAGCTGGAGCCCTCACCAGGATTGCATAGCACGATTGATGGAATGCC 1587 ||| || |||||||| || ||| || |||||||| || | ||||| || || || Sbjct 6801 AAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCC 6742 Query 1588 CCCTTTAATTTGAACTGGCTTTCCATACTTACAGTTTGACTGCCAGTCTTTCTGGGCCCC 1647 ||||||| || || |||||||| || | | || ||||||| || | | |||||| Sbjct 6741 GCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCC 6682 Query 1648 AATTAATTCTTTCCAATGCTTTAATTTCAAATAGCTAGGGCTGACATCATCAATGACGTT 1707 || ||||| || |||| ||||| ||| | || || | |||||||||||| Sbjct 6681 CATGAATTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTT 6628 Query 1708 ATATTCTACGTCATTCGAATAGACCCTAGAATTGAAATCCAGATGACCTGACAGATAATT 1767 || | ||||| || | | | | ||| |||||| | | ||||| Sbjct 6627 GTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATT 6568 Query 1768 ATGCTTTCCTAATGATCTTGCCCACATTGTCTTGCCGGTTCTTGAATCACCTTCGACGAT 1827 || ||||||||||| ||||| ||||| || || ||||| | |||||||| || | Sbjct 6567 GTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAAC 6508 Query 1828 GATACTAATAGGTCTCTCTGGCCGCGCAGCGGCACTCATGCCAAAATAATTGTCTGCCCA 1887 ||||| ||||||| | |||| | ||| |||||||| ||| | | || |||| Sbjct 6507 TATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCA 6451 Query 1888 TTCCTGCATCTCTTCTGGTACGTTAGTGAAAGAAGACAGTTGAAACGGAGGGACCCACGG 1947 || || | || |||||||| | || | | | ||| |||| || | Sbjct 6450 GTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATAT 6391 Query 1948 TTC---TGGAGCCTTCATGAATATGCGTTCCAAATTTGCCCTTAGATTATGTTGTTGTGT 2004 | | |||||||| |||||| |||||||| || ||| |||| || Sbjct 6390 TGCAGGTGGAGCCTG---GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAA 6334 Query 2005 AACATAATCTTTTAGCTGTTCTTCTTTCAAAATTTGAAGAGCT--TGTTCTGCAGATGAG 2062 | |||||||||| | ||| ||| | | || | | ||| |||| | ||| Sbjct 6333 ATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTT--AGACCCA 6276 Query 2063 GCATTTAATGCCCTGGCGTAAGAGTCATTAGC----TGTCTGGCAGCCTCCTCTAG---C 2115 | ||||| || |||||| |||||||| ||| || | |||| | ||| | Sbjct 6275 GAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGT-TGACCCCCTCTTGTAGTTGC 6217 Query 2116 ACTTCTACCGTCAACCTGGTATTGTCCCCACTCCAGTGTGTCTCCATCCTTGCTGACGTA 2175 | ||| || || | |||| ||| |||||| || | ||| ||||| | ||| || || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2176 GGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCT 2235 ||||| |||| ||||||||||||| ||||||| ||||||||||||||||||| |||||| Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2236 GGTTGGGGATACCAGATCGAAGAATCTGTTACTTGTGCAGTTGTATTTCCCTTCGAATTG 2295 |||||| || || |||||||||||||||||| | ||||| |||| |||||||||||||| Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2296 TATAAGCACATGGAGATGAGGCTGCCCATCTTCGTGTAATTCTCTGGCAATTTTAATGAA 2355 |||||||| |||||| |||| | || | ||| || ||||||| ||| || ||| | Sbjct 6036 GATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTA 5977 Query 2356 TTTCTTATTTGTGGGTGTCTTCAAGTTGATGAGTTGCTG-TAATGCTTCTTCTTTTGATA 2414 |||||| ||| || || || | ||| ||| | || | ||||| ||||||| | Sbjct 5976 TTTCTTGTTTACTGGGGTATTTAGGTT-TTGAATAATTGAGAGAGCTTCCTCTTTTGTAA 5918 Query 2415 GTGAGCACTGAGGATATGTGAGAAAATAATTTTT 2448 | ||||| || |||||||| |||||| |||||| Sbjct 5917 GAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8156956144980