Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003861.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq9745 435 5e-119 >seq9745 Length=7305 Score = 435 bits (482), Expect = 5e-119 Identities = 697/995 (70%), Gaps = 12/995 (1%) Strand=Plus/Minus Query 1587 GGCTCGCTGAGGGAGATGAAGGTCGCATTCTTCAGAGCCCAAGCCTTCAATGCGATATTC 1646 |||| | ||||| | |||| ||||| | |||||||| | ||| | || ||| Sbjct 6872 GGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTC 6813 Query 1647 TTCGCCTCGTCAAGGAATTCTTTATAGCTGGAATTGGGCCCAGGATTGCACAGGAAGATA 1706 || | |||||||| || |||||||| || || ||||| || |||||||| |||||||| Sbjct 6812 TTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATT 6753 Query 1707 GTGGGGATTCCCCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTTGACTGCCAGTCC 1766 ||||| || || ||||||| || || || || ||||| | | || ||||||| || Sbjct 6752 GTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCA 6693 Query 1767 CTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAATGCGGATCTACGTCATCAATT 1826 |||| ||||||||||||||||||||| || |||| |||| ||||||| |||| |||||| Sbjct 6692 CTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATG 6633 Query 1827 ACGTTGTACCATGCATCATTGCTGTAAACCCTAGGACTCAAGTCCAGATGTCCACACAGA 1886 ||||||||||| ||||||||| |||| | || || | || ||| || || | Sbjct 6632 ACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAG 6573 Query 1887 TAGTTGTGTGGACCCAATGACCTAGCCCACATCGTTTTGCCTGTACGACTATCGCCCTCG 1946 || |||||||| || ||||| |||||||| || ||||| || || | | || || || Sbjct 6572 TAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCT 6513 Query 1947 ATGACTATACTATTAGGTCTCAAAGGCCTCGCAGAGGCACCCATGACATTCTCTGACACC 2006 | |||||||| |||||| ||||||| ||||||||| || || || ||| ||| Sbjct 6512 ACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACC 6453 Query 2007 CACTCCTCAAGTTCATCTGGAACTTGGTCAAATGAAGAGGCTGAGAAGGGAGACACATAC 2066 || || | ||| || || || | || ||||| | || | || ||||| ||||| Sbjct 6452 CAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATAT 6393 Query 2067 ACCTCGGGAGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAGATTATGAAATTGTAAA 2126 | | || |||| || ||| |||| ||||||||||||| ||||||| ||||| Sbjct 6392 ATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAA 6333 Query 2127 ACATAATCCTTGGGTGCTAACTCCTTAATGA-CTCTAAGAGCCTCTGGCTTACTGCCTGT 2185 |||||| || || | ||| |||| | ||||||| || ||| ||| || | Sbjct 6332 TAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGA 6274 Query 2186 GTTAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTCTGCTGTCCCCCTC------TTGCAGA 2239 || || ||| | |||||| | || || || | || || ||||||| ||||||| Sbjct 6273 ATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGA 6214 Query 2240 TCTTCCATCGATCTGAAACTCACCCCAGTCGATGGTGTCTCCATCCTTGTCGATGTAGGA 2299 ||||||||| ||||| || || ||||| || || || ||||| | ||| ||||| || || Sbjct 6213 TCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGA 6154 Query 2300 CTTGACGTCTGAGCTGGACTTAGCGCTCTGTATGTTGGGGTGGAAACTGGTGCTACTGCT 2359 ||| |||| |||||||| ||| | | ||||||||| || |||||| || ||| | Sbjct 6153 CTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGT 6094 Query 2360 TGGGTGTACACAATCGAATTGCCGATTGTTTGTGATCGTGAGCTTCCCTTCGAACTGAAG 2419 ||| ||| |||||| | || || ||| ||| |||||||||||| || | Sbjct 6093 TGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGAT 6034 Query 2420 CAGAGCATGGAGGTGAGGTTCCCCATTATGATGGAGTTCTCTGCAAATTTTAATAAATTT 2479 || | ||||| ||||||||| || | ||| |||||||||||| || || |||| Sbjct 6033 AAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTT 5974 Query 2480 GATGTTTGTCGGAAGACTCAAGCTTCGGAAGAAGTCGAGTAAG--TGTTCTTTGGTGAGA 2537 ||||| | | | | || || ||| || | ||| || | ||||| || ||| Sbjct 5973 CTTGTTT-ACTGGGGTATTTAGGTTTTGAATAA-TTGAGAGAGCTTCCTCTTTTGTAAGA 5916 Query 2538 GAACACTTAGGGTATGTGAGGAATATATTTTTGGA 2572 || || | || ||||| || || |||||||| || Sbjct 5915 GAGCAGTGGGGATATGTTAGAAAAATATTTTTAGA 5881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8626147559460