Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003867.1 Length=2620 Score E Sequences producing significant alignments: (Bits) Value seq9745 331 2e-87 >seq9745 Length=7305 Score = 331 bits (366), Expect = 2e-87 Identities = 668/986 (68%), Gaps = 19/986 (2%) Strand=Plus/Minus Query 1620 GAAGAGCGCATTCTTGATAGTCCAGTTCCTGAGTGCTGTGTTTTCCTCTTTGTTCAGGAA 1679 ||||| ||||| ||| || |||| | | | |||| ||| | |||| || || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1680 ATCTTTATAGCTGGAGCCCTCACCTGGATTGCAAAGCACGATTGCTGGGATCCCACCTTT 1739 |||||||| || ||| |||||||||||||| | ||||| || ||||| ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1740 AATTTGAACTGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTCTCTGGGCCCCCAGCAA 1799 || || || ||||| ||||| | | ||| ||||||| || || | |||||||| || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1800 TTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTC 1859 ||| || | || |||| ||| |||| | |||| |||||||||||| ||| Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1860 CACTGCATTTGAATAGACTCGAGAATTGAAATCCAAATGGCC-CATGAGATAATTATGTG 1918 | |||| || | | | | ||| |||| || ||| || ||||| |||| Sbjct 6621 GGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAG-TAATTGTGTG 6563 Query 1919 GACCCAGTGCACGTGCCCACATTGTCTTCCCTGTTCTCGAGTCTCCTTCAACTATGATAC 1978 | || | || | ||||| ||||| ||||| ||||| | || ||||| || | |||| Sbjct 6562 GGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATAC 6503 Query 1979 TAATAGGTCTATCTGGCCGCGCAGCGGAACCCCTTCCAAAATAATCGTCTGCCCATTTTT 2038 | ||||||| | |||| | ||| || || | ||| | || || |||| | || Sbjct 6502 TCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTT 6446 Query 2039 GCATTTCTTCCGGGACGTCTGTGAAAGAAGACAGATG-AAATGGAGGGACCCATGGTTCC 2097 | | ||||| |||| ||| ||| ||| ||| |||| || || | | Sbjct 6445 GAAGAATCTCCGGTACGT-TGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCA 6387 Query 2098 GGTGGTTTGTGGAAGATCCTTTGTGCATTTGCGACCAGGTTATGGTGATGGAGGAAGAAA 2157 ||||| ||||| ||| | | ||| || | |||| | | | | || Sbjct 6386 GGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAA 6327 Query 2158 TGTTGAGGCTGCTGTTCTTTTATTATTTGTAGAGCCTCTTCTGCACATGAGGCATTCAAT 2217 | || || | | ||| | ||||| | || || || | | | | ||| | Sbjct 6326 TCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGG 6267 Query 2218 GCCTTTGCATATGTATCGTTGGCCGACTGGCAGCCTCCTCTAG------CAGATCGACCG 2271 || | ||| || ||| || ||||| || || ||||| | |||||| || Sbjct 6266 GCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCA 6207 Query 2272 TCGATCTGGAATTCCCCCCATTCTGTCGCATCTCCGTCCTTGTCGATGTATGCCTTGACG 2331 || ||||||||||| ||||| || | | |||||||| ||| ||||| || | ||| ||| Sbjct 6206 TCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACG 6147 Query 2332 TCGGAGCTCGACTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCGGGATGGGGAG 2391 | |||||| || ||| ||||||||||||| ||||||||||||| ||||| || ||| ||| Sbjct 6146 TAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAG 6087 Query 2392 ACCAGGTCGAAGAATCTGCTATTCGTGCACTGGTATTTGGCTTCGAACTGCAAAAGCACA 2451 || || |||||||||||| |||||||||| ||| || ||||||| || | |||||| Sbjct 6086 ACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACG 6027 Query 2452 TGGAGATGAGGCTCCCCATTTTCATGAAGCTCTCTGCAGATCTTGATGAACTTCTTGTTA 2511 |||||| |||| |||| ||||||||| |||||||| ||||||||| | |||||||| Sbjct 6026 TGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTT 5967 Query 2512 ACTGGAGTGTTTAGGTTTTTTATTTGGGAAAGTGCCTCTTCTTTGGTAATGGAGCACTGT 2571 ||||| || |||||||||| || || || || || ||||| |||| ||||| || Sbjct 5966 ACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGG 5907 Query 2572 GGATAAGTGAGGAAATAGTTTTTAGA 2597 ||||| || || ||| |||||||| Sbjct 5906 GGATATGTTAGAAAAATATTTTTAGA 5881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8198168904360