Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003891.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq9745 531 9e-148 >seq9745 Length=7305 Score = 531 bits (588), Expect = 9e-148 Identities = 707/977 (72%), Gaps = 19/977 (2%) Strand=Plus/Minus Query 1613 GAAGGTTGCATTTTTTAGAGCCCACTGCTT--TAG-TGCGTTATTCTTGTCTTCGTCCAG 1669 |||| ||||||| | |||||||| ||| ||| |||||| ||| |||||||| || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT---CTTATCTTCGTCAAG 6799 Query 1670 AAATTCTTTATAACTGCTGTTAGGTCCTGGATTGCAGAGAAAGATAGTGGGAATGCCTCC 1729 ||| ||||||||||| ||| |||||||||||||| || ||||| ||||| || || || Sbjct 6798 AAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCC 6739 Query 1730 TTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCAT 1789 ||||| || || |||||||||||| || | || | ||||| || |||| ||||||||| Sbjct 6738 TTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCAT 6679 Query 1790 GAACTCTTTAAAGTGTTTCAGATAATGCGGATCGACGTCATCAATGACGTTGTACCACGC 1849 ||| || ||||| ||||| | |||| ||||||| |||| |||||||||||||||||| || Sbjct 6678 GAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGC 6619 Query 1850 ATCATTTGAGTACACTCGTGGGCTCAAGTCCAAATGACCGCATAGATAATTATGCGGGCC 1909 |||||| |||| | |||||| | || |||||||||||| ||||| || ||||| Sbjct 6618 ATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCC 6559 Query 1910 TAAAGACCTAGCCCACATGGTTTTGCCCGTACGACTATCACCTTCAATAACAATACTTAT 1969 ||| || |||||||| || ||||| || || | | |||||||| | ||| ||||| || Sbjct 6558 TAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCAT 6499 Query 1970 GGGCCTAATAG---CGGCAGCGGCATCCACAACATTTTCTGCAGCCCAATGATGGAGTTC 2026 || | || ||| |||| |||||| |||||| || |||| | || || Sbjct 6498 AGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAAT 6439 Query 2027 CTCTGGAACTGTATCAAATGAAGAACAAAGAAATGGAGAAACATAAACCTCCGCCGAAGG 2086 ||| || || | | ||||| | | | ||| ||||||||||| | | | | || Sbjct 6438 CTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGC 6379 Query 2087 CGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAATACAAAATCTTTGGG 2146 | || ||| |||| |||||||||||||| ||||||| |||| | ||||||| || Sbjct 6378 CTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2147 AGCTTTCTCCCTTAAAATATCGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGC 2206 ||| ||||| | || || | ||| || | ||| ||||| ||||| | || || || Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2207 ATATGCGTCGTTGGCAGATTGCTGACCTCCTC------TAGCTGATCTGCCATCGATTTG 2260 || | || || || ||||| ||||| |||| | || ||||| ||||| || || Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2261 GAAAACTCCAAAATCAATGAAGTCTCCGTCTTTTTCCACATAGGCCTTGACATCTGAACT 2320 ||| |||| ||||||| ||||||| || || | ||| | ||| || | || || Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCT 6139 Query 2321 GCTCTTAGCTTTCTGAATGTTTGGATGGAAATGTGTTGATCTGGTTGGGGAAACCAGGTC 2380 | ||| || ||| ||||||||||||||||||||||| |||||||| || || || || Sbjct 6138 GGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATC 6079 Query 2381 GAAGAATCTGTTATTTGTGCATTGGAATTTTCCTTCGAACTGGATGAGCACGTGGAGATG 2440 ||||||||||||||| |||||| | | || |||||||| ||||| |||||||||||| | Sbjct 6078 GAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACG 6019 Query 2441 AGGTTCCCCATCTACGTGAAGCTCTCTACACACTCTAATGAATAATTTAGAAGTTGGAGT 2500 |||||||| | | | ||| ||||| || | | ||| || || ||| || Sbjct 6018 AGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGT 5959 Query 2501 TTTTACGGTTTG--TAATTGGGAAAGGTGCCTCTCTTTGGAAAGAGAACATTTAGGGTAT 2558 |||| | |||| |||||| || || | | |||||| | |||||| || | || ||| Sbjct 5958 ATTTAGGTTTTGAATAATTGAGAGAGCTTC--CTCTTTTGTAAGAGAGCAGTGGGGATAT 5901 Query 2559 GTGAGGAAATAATTTTT 2575 || || ||| |||||| Sbjct 5900 GTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8607126285900