Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003896.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq9745 563 1e-157 >seq9745 Length=7305 Score = 563 bits (624), Expect = 1e-157 Identities = 728/1002 (73%), Gaps = 18/1002 (2%) Strand=Plus/Minus Query 1595 ATAGTGGCTCGTTGAGGGTGATGAATTCTGCATTTTTTAAAGCCCAGGCTTTTAATGCGC 1654 ||| ||||| | ||||| ||| |||||||| | | |||||||| || | || Sbjct 6877 ATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTG 6818 Query 1655 TGTTTTTCTCCTCATCGAGGTACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGA 1714 ||| || || || || || |||||||||| || |||||||||||||||||||| |||| Sbjct 6817 CGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGA 6758 Query 1715 AGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTGCCGTACTTGGTGTTGCTTTGCC 1774 |||| ||||| || || ||||||| || || ||||| ||||| | | || |||| Sbjct 6757 AGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCC 6698 Query 1775 AATCTCTCTGGGCCCCCATGAATTCTTTGAAATGTTTCAGATAATGCGGATCAACGTCAT 1834 |||| || | ||||||||||||||| || |||||||| | |||| |||||||||||| || Sbjct 6697 AATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTAT 6638 Query 1835 CAATGACGTTATACCACGCATCATTTGAATACACTTTAGGGCTTAAATCAAGGTGCCCAC 1894 |||||||||| ||||| |||||||| ||| ||| ||||||| |||| || || | Sbjct 6637 CAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGC 6578 Query 1895 ATAAATAATTATGTGGACCCAATGAACGCGCCCAAACAGTCTTCCCTGTTCTAGACTCAC 1954 |||| ||||| ||||| || ||||| | ||||| | || ||||| ||||||| ||||| Sbjct 6577 ATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCAC 6518 Query 1955 CCTCTATTACTATACTTATGGGTCTCAAAGGCCGCGCAGCGGCATCCTTCACATTCTCGG 2014 | |||| |||||||| || |||| ||||| | ||| |||| | || || || Sbjct 6517 CTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTT 6458 Query 2015 CGACCCACTCCTCGAGTTCTTCTGGAACTCGATCAAAAGAAGAAGATAAAAAAGGAGAAA 2074 | ||||| || | || || || || | ||| | | |||| ||||||||||| Sbjct 6457 CAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAA 6398 Query 2075 CATAAACCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACNNNNNNNNTTATGAAATT 2134 |||| | | |||| || ||| |||| |||||| ||||||| Sbjct 6397 CATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAAC 6338 Query 2135 GTAAAACATAATCCTTAGGGGCTAATTCCCTAAGGA-CGTTAAGAGCCTCTGACTTACTT 2193 ||||| |||||| || ||| | |||||||| | | |||| || ||| ||| Sbjct 6337 GTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGAC 6279 Query 2194 CCAGTGTTAAGCGCCTGGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTC------TT 2247 |||| || || || | |||||| | ||||| || |||||||| ||||||| || Sbjct 6278 CCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTT 6219 Query 2248 GCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTCTCCAGA 2307 ||||||| |||||| ||||| || |||||||| || | || ||||||| |||||| | | Sbjct 6218 GCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATA 6159 Query 2308 TAGGACTTGACGTCTGACGAGCT---CTTAGCTCCCTGAATGTTCGGATGGAAATGTGCT 2364 || ||||| |||| | ||||| ||| ||||||| ||||| ||||||||||||| | Sbjct 6158 TACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTT 6102 Query 2365 GACCTGGTGGGGGAGACCAGGTCGAAGAATCGTTGATTCTTGCACTGGAACTTGCCTTCG 2424 |||||||| || ||||| || |||||||||| | |||| |||| | |||| |||||| Sbjct 6101 GACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCG 6042 Query 2425 AACTGGATAAGCACGTGGAGATGAGGCTCCCCATTCTCATGGAGTTCTCTGCAAACTTTA 2484 || |||||||||||||||||| |||| |||| || ||||| ||||||||||| || Sbjct 6041 AATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTG 5982 Query 2485 ATATATTTTTTGGATGTTGGGGTTTCTAGGTTAT--TTAATTGGGAAAGGGCTTCTTCTT 2542 || ||||| ||| | |||||| | |||||| | ||||| || || ||||| |||| Sbjct 5981 ATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTT 5924 Query 2543 TAGTGAGAGAGCATTTGGGATAAGTGAGGAAATAATTCTTAG 2584 | || |||||||| | |||||| || || ||| ||| |||| Sbjct 5923 TTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8661019894320