Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003897.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq9745 416 5e-113 >seq9745 Length=7305 Score = 416 bits (460), Expect = 5e-113 Identities = 653/937 (70%), Gaps = 16/937 (2%) Strand=Plus/Minus Query 1650 TTCTTTTCTTCATCCAAGAATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAG 1709 ||||| ||||| || | || |||||||| || |||||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1710 ATTGTGGGAATTCCGCCTTTAATTTGAACTGGCTTATTGTACTTTCTATTTGATTGCCAG 1769 |||||||| || |||||||||| || || ||||| ||| ||||||| | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1770 TCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTTGGGGTCTACGTCATCA 1829 || |||| ||||||||||||||||||||| || |||| || || || |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1830 ATTACGTTATACCACGCATCATTACTGTAGACCTTTGGGCTAAGGTCTAGATGACCACAC 1889 || ||||| ||||| |||||||| |||| |||||||| | || |||||| || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1890 AAATAATTATGTGGTCCCAGTGATCTGGCCCACATTGTTTTCCCCGTCCTACTGTCACCC 1949 || ||||| ||||| || | |||||| ||||| ||||||||||| || ||| ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1950 TCAATCACTATACTTACGGGCCTCAAAGGCCGCGCAGCGGCATTGACGACGTTCTCGGCA 2009 || | |||||||| | || | ||||| | ||| |||| | || ||||| || || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2010 GCCCATTCCTCAAGTTCTTCTGGAACCTGATCAAAGGAAGNNNNNNNNNNNNNNNNAACA 2069 |||| || | ||| || || || | | ||| | | |||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2070 TAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGT 2129 || | | ||||| || ||| |||| ||||||| |||||| | ||||| || Sbjct 6395 TATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT 6336 Query 2130 AAAACATAATCTTTGGGAGCCTTCTCCCTTAATATATTGAGGGCCTCAATTTTTGACCCT 2189 ||| ||||||||| || || ||||| | ||| | | ||| | |||| ||||| Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCA 6276 Query 2190 GCGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCT 2243 | || | || || || || | || || || ||||| ||| |||| | || Sbjct 6275 GAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCA 6216 Query 2244 GATCTTCCATCGACTTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAG 2303 ||||||||||| | ||||| |||| ||||| | ||||||| ||||| || || Sbjct 6215 GATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATAC 6156 Query 2304 GTTTTGACATCGCTTGAGCT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGAC 2360 | || || | | ||||| |||| ||||||| ||||| ||||||||||||| |||| Sbjct 6155 GACTTCACGTAG---GAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGAC 6099 Query 2361 CTGGTTGGGGAGGTAAGGTCGAAGAATCTATTGTTCTTGCACTGGAATTTTCCTTCGAAC 2420 |||||||| ||| ||| ||||||||||| || ||| |||| | | || |||||||| Sbjct 6098 CTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAAT 6039 Query 2421 TGGATGAGAACATGTAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATG 2480 ||||| || || || | |||| || | ||| ||| |||||||| || | ||| Sbjct 6038 TGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATG 5979 Query 2481 AATTTTTTAGAAGTTGGTGTTTGGAGATTT--AAGAATTGGGAAAGTGCTTCTTCTTTAG 2538 |||| || ||| || | || ||| || |||| || || ||||| ||||| | Sbjct 5978 TATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTG 5921 Query 2539 TGAGGGAGCACTTGGGATAAGTGAGAAAATAATTTTT 2575 | || ||||| | |||||| || |||||| |||||| Sbjct 5920 TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8638828408500