Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003898.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq9745 464 1e-127 >seq9745 Length=7305 Score = 464 bits (514), Expect = 1e-127 Identities = 696/985 (71%), Gaps = 14/985 (1%) Strand=Plus/Minus Query 1585 TGGCTCGGTGAGGGTGATGAATTCCGCATTCTTTAAAGCCCAGTCTTTGAGTGCGAAATT 1644 ||||| ||||||| ||| | ||||| | | ||||||| || | || || Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1645 CTTTTCTTCGTCTAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGAT 1704 ||| |||||||| | |||||||||| ||| | || |||||||||||||||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGAT 6754 Query 1705 TGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTCGCTTTGCCAGTC 1764 ||| || || || ||||||| || || || || |||||| | | | ||||| || Sbjct 6753 TGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATC 6694 Query 1765 CCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAAT 1824 |||| ||||||||||||||| ||||| || |||| ||| | ||||| |||| |||||| Sbjct 6693 ACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAAT 6634 Query 1825 GACGTTGTACCATGCCTCATTGTTGTAGACTCTTGGGCTTAGGTCAAGATGACCACACAA 1884 |||||||||||| || ||||||||||| | ||||||||| ||| |||||| || || Sbjct 6633 GACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAA 6574 Query 1885 GTAATTGTGTGGGCCTAGAGACCTGGCCCAAAGTGTCTTCCCTGTACGACTCTCTCCCTC 1944 ||||||||||||||||| || || ||||| | ||| ||||| || | | ||| || || Sbjct 6573 GTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTC 6514 Query 1945 TACCACAATACTCATGGGTCTCCATGGCCGCGCAGCGGAATCCCTCACGTTCTCGGCAAC 2004 ||| || |||||||| |||| |||| | ||| || | | ||||| || |||| Sbjct 6513 TACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAAC 6454 Query 2005 CCATTCTACAAG-TTCTACTGGAACTTGATCAAATGAAGAAGAATTAAAAGGAGAAATAT 2063 ||| ||| ||| ||| | || || | | ||||| | || ||||||||||| || Sbjct 6453 CCAGTCTTGAAGAATCT-CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACAT 6395 Query 2064 AAACCTCTAATGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTA 2123 | | | ||||| || ||| |||| |||||| |||||| ||||||| ||| Sbjct 6394 ATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTA 6335 Query 2124 AAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCTCAGCTTTGGACCCTG 2183 || | ||||||| || ||| ||||| | ||| | | ||| | | ||| ||||| | Sbjct 6334 AATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAG 6275 Query 2184 AATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCTG 2237 |||| | || || || || | || || || ||||| ||| |||| | || | Sbjct 6274 AATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAG 6215 Query 2238 ATCTTCCATCGACCTGGAAAATTCCATGATCAAGCACGTCTCCGTCTTTCTCCATATAGG 2297 |||||||||| | |||||| ||| ||||| ||||||| ||||| ||||| | Sbjct 6214 ATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACG 6155 Query 2298 TTTTGACATCTGTTGAGCT---CTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACC 2354 || || | ||||| ||| ||||||| ||||| ||||||||||||| ||||| Sbjct 6154 ACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2355 TGGTTGGGGATGTGAGGTCGAAGAATCTGTTATTTTTACATTGGAATTTTCCTTCGAATT 2414 ||||||| || || ||||||||||||||||| | ||| | | || |||||||||| Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2415 GGATGAGAATGTGCAGGTGAGGAGCCCCATCTTCGTGAAGCTCTCTGCAAACCCTAATGA 2474 |||| || | ||| || |||| ||| | ||| ||| |||||||||| | | ||| Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGT 5978 Query 2475 ATAGCTTATTTGTTGGGGTTTGTAGAGCTTGTATTTGGGAAAGTGCCTCTTCTTTGGTTA 2534 || ||| ||| |||||| | ||| ||| || || || || || ||||| || | Sbjct 5977 ATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAA 5918 Query 2535 GGGAGCAGTGTGGATATGTGAGGAA 2559 | |||||||| |||||||| || || Sbjct 5917 GAGAGCAGTGGGGATATGTTAGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8575424163300