Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004005.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq9745 515 7e-143 >seq9745 Length=7305 Score = 515 bits (570), Expect = 7e-143 Identities = 720/1004 (72%), Gaps = 22/1004 (2%) Strand=Plus/Minus Query 1606 GAACAGTGGCTCGTAGAGGGTGACGAAGGTTGCATTCTTGAGCGCCCAATTTTTCAAGGA 1665 ||| | ||||| | |||| ||||| |||||| |||| ||||| || | | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1666 TATAtttttttCTTCGTCTAGATATTCCCTATATGAGGAGGTAGGTCCTGGATTGCAGAG 1725 | || || |||||||| ||| | || |||| ||| | |||||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1726 GAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTG 1785 |||||| ||||| || || ||||||| || || |||||| ||||| || | || || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1786 CCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTC 1845 ||| || || | |||||||||||||||||| || || ||||||||| |||| || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1846 ATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGGCTTAGGTCTAGATGTCC 1905 |||||||||||||||||| |||||||| ||||| |||||||||| || ||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1906 ACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTTTTGCCTGTTCTGCTATC 1965 ||||| ||||| |||||||||| || || ||||| |||||||| || ||||| || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1966 ACCCTCAATGACAATACTATTAGGTCTCCATGGCCGCGCAGCGGAAGACACGACGTTCTC 2025 ||| || | || ||||| |||||| |||| | ||| || | ||| ||||| || Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2026 AGCGACCCACTCTTCAAGTTCATCTGGAACTTGATTAAAAGAAGAAGAAAGAAATGGAGA 2085 | ||||| |||| ||| || || || | ||||| | | || | ||| ||||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2086 AACATAAACTTCTAAAGGAGGA--CT-AAAAATCCTATCTAAATTTGAACTTAAATTATG 2142 |||||| | | | ||| ||| || || ||| |||| ||||| | | |||| |||| Sbjct 6399 AACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATG 6343 Query 2143 AAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAATATATTGAGGGCCTCGGATTT 2202 ||| ||||| ||| || |||||| || || | | ||| | | ||| | | ||| Sbjct 6342 AAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTT 6283 Query 2203 ATTGCCTGAATTGAGTGCTTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTC---- 2258 | || ||||| || ||||| || || | || || || ||||| ||||| |||| Sbjct 6282 AGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGT 6223 Query 2259 --TAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTCTC 2316 | || ||||| ||||| || ||||| |||| ||||||| ||||||| ||||| Sbjct 6222 AGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTC 6163 Query 2317 CACGTAGGTCTTGACATCTGTTGAGCT---CTTAGCTGCCTGAATGTTCGGATGGAAATG 2373 | || | ||| || | ||||| ||| || |||| ||||| ||||||||||| Sbjct 6162 GATATACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATG 6106 Query 2374 TGCTGATCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTCTTACATTGGTATTTGCC 2433 || ||| ||| |||| || || || |||||||| | | ||| | ||| ||| || || Sbjct 6105 TGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCC 6046 Query 2434 TTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAAC 2493 |||||||||||||||||| |||||| | ||||||| || || || ||||||||||| Sbjct 6045 TTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAAT 5986 Query 2494 TTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTT--TTAATTGGGAAAGTGCTTCC 2551 ||||||||||| || ||| |||||| | |||||||| ||||| || || |||||| Sbjct 5985 CTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCC 5928 Query 2552 TCTTTAGAGAGAGAACAATTGGGATATGTTAGGAAATAATTTTT 2595 ||||| | ||||| || | |||||||||||| ||| |||||| Sbjct 5927 TCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8708573078220