Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004044.1 Length=2734 Score E Sequences producing significant alignments: (Bits) Value seq9745 495 6e-137 >seq9745 Length=7305 Score = 495 bits (548), Expect = 6e-137 Identities = 705/995 (71%), Gaps = 16/995 (2%) Strand=Plus/Minus Query 1581 TGGCCCGTTGAGGGAGACGAAGATCGCATTCTTTACAGCCCAGTTTCGAAGTGCTGAGTT 1640 |||| | ||||| | |||||| ||||| | | ||||||| || |||| ||| Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1641 CTTTTCTTCTTCCAGATACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGAT 1700 ||| ||||| || ||| |||||||||| || || ||||||||||||||||| |||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGAT 6754 Query 1701 AGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTC 1760 ||||| ||||||||||||| || || || || ||||| | | || ||||| || Sbjct 6753 TGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATC 6694 Query 1761 CCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGATCTACGTCATCAAT 1820 |||| ||||||||||||||| ||||| || |||| |||| ||||||| |||| |||||| Sbjct 6693 ACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAAT 6634 Query 1821 GACGTTGAACCAAGCATCATTACTGTACACCTTTGGACTCAGATCCAAATGACCACACAA 1880 ||||||| |||| |||||||| ||||| ||||| || | ||| ||||||| || || Sbjct 6633 GACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAA 6574 Query 1881 GTAATTATGTGGTCCTAATGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTC 1940 |||||| ||||| |||||||| || ||||| || || ||||| |||||| ||||| || Sbjct 6573 GTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTC 6514 Query 1941 TATCACTATACTTACCGGTCTTAAAGGCCGCGCAGCGGCACTCACAACATTATCGACCGC 2000 || |||||||| | |||| ||||| | ||| |||||||||||| || || | | Sbjct 6513 TACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAAC 6454 Query 2001 CCACTCATCAAGTTCTTCGGGAACTTGGTCAAATGAAGANNNNNNNNNNGGAGAA--ATA 2058 ||| || | ||| || || || | || ||||| | |||||| ||| Sbjct 6453 CCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATA 6394 Query 2059 TATTCCACTATTGGAGGAGTAAAAATCCTATCTAAATTACNNNNNNNNTTATGAAACTGT 2118 |||| || ||||| || ||| |||| |||||| ||||||| || Sbjct 6393 TATTGCA--GGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT 6336 Query 2119 AAAACAAAATCTTTAGGAGCCTTTTCCCTCAGTATATTGAGGGCCGAAGCTTTGGACCCT 2178 ||| | ||||||| || |||||||| | ||| | | ||| | | ||| ||||| Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCA 6276 Query 2179 GAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCC 2232 ||||| | || || || || | || || || ||||| ||| |||| | || Sbjct 6275 GAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCA 6216 Query 2233 GATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTAG 2292 ||||||||||| |||||||| |||| ||||| ||||||| || || || || Sbjct 6215 GATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATAC 6156 Query 2293 GATTTGACATCTGTTGAGCT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGAC 2349 || || || | ||||| |||| ||||||| ||||| ||||||||||||| |||| Sbjct 6155 GACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGAC 6099 Query 2350 CTGTGTGGGGATGTGAGATCGAAGAATCTTTGATTCTTACACTGGAACTTTCCTTCGAAT 2409 ||| ||| || |||||||||||||| | |||| | || | |||| ||||||||| Sbjct 6098 CTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAAT 6039 Query 2410 TGGATGAGAACATGCAAGTGAGGAGACCCATCTTCGTGTAATTCTCTACAGATTCTGATA 2469 ||||| || || || | |||| || | ||| || |||||| || || |||| Sbjct 6038 TGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATG 5979 Query 2470 AATAGTTTATTTACTGGGGTTTCTAGGGTTTTAATTTGGGAAAGTGCCTCTTCCTTAGTG 2529 || || ||||||||||| | |||| ||| ||| || || || || || || || Sbjct 5978 TATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTA 5919 Query 2530 AGAGAGCAGTGTGGATATGTGAGGAAATAATTTTT 2564 ||||||||||| |||||||| || ||| |||||| Sbjct 5918 AGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8559573102000