Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004071.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq9745 542 5e-151 >seq9745 Length=7305 Score = 542 bits (600), Expect = 5e-151 Identities = 698/957 (73%), Gaps = 14/957 (1%) Strand=Plus/Minus Query 1630 GCCCAGGATTTGAGATGCGCGTTCTTGTCCTCGTCTAAATACTCTTTATATGAAGAATTG 1689 |||||||| || | | |||||||| || ||||| | | |||||||||| || ||| Sbjct 6836 GCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTG 6777 Query 1690 GGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGCTTCCCG 1749 || ||||||||||| ||||||||||| || || || ||||||| || || ||||| ||| Sbjct 6776 GGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCG 6717 Query 1750 TATTTTGTGTTGCTTTGCCAGTC-CTTTTGTGCCCCCATGAACTCCTTAAAGTGTTTCAG 1808 ||| || | || ||||| || |||||| ||||||||||| |||||||| ||||| | Sbjct 6716 TATCTTCTATTATACTGCCAATCACTTTTG-GCCCCCATGAATTCCTTAAAATGTTTTAA 6658 Query 1809 ATAATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATTACTGAACACCTTTGG 1868 |||| |||| ||||| | ||| |||||||| ||||| || ||||| || || ||||| Sbjct 6657 ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGG 6598 Query 1869 GCTCAGATCAAGATGACCGCACAGATAATTGTGAGGCCCAAGACTTCTGGCCCATACGGT 1928 ||| | |||| ||||||||| | |||||||| || || | ||| ||||||| || Sbjct 6597 GCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGT 6538 Query 1929 CTTTCCTGTTCTGCTTTCCCCTTCAATCACTATACTAATCGGTCTACTTGGCCGCGCAGC 1988 || || ||||| || ||||| | |||||||| || |||| |||| | ||| Sbjct 6537 TTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGA 6478 Query 1989 GGC-CTCAACGACGTTCTCCGCCGCCCATTCTTCAAGTTCTTCTGGAACTTGGTCGAACG 2047 ||| |||| | ||||| || | |||| |||| ||| || || || | || || | Sbjct 6477 GGCACTCA-CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATG 6419 Query 2048 AAGAAGACAAAAAAGGAGAAACATAAGGAGCTGGAGGCTCCTGAAAAATCCTATCTAAAT 2107 | || | ||||||||||||||| || || || |||| || ||| |||| |||| Sbjct 6418 TACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAAT 6359 Query 2108 TNNNNNNNNNNNNATGAAATTGTAAAACAAAATCTTTGGGAGCTAACTCCCTTATAACC- 2166 | |||||| ||||| | ||||||| || | ||||| || | | Sbjct 6358 TAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCT 6299 Query 2167 CTAAGAGCCTCTGACTTACTTCCTGAGTTAAGCGCTGCGGCGTAAGCGTCATTGGCGGTC 2226 ||||| || ||| ||| || || || || ||| | |||||| | ||||| || | Sbjct 6298 CTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGAT 6240 Query 2227 TGTTGTCCCCCTCTTG------CAGATCTTGCATCGATCTGAAACTCTCCCCATTCGAGG 2280 ||||| |||||||||| |||||||| |||| ||||| || |||||||| || | Sbjct 6239 TGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATT 6180 Query 2281 GTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATG 2340 || ||||||| |||||| | ||| ||||| |||| |||||| |||||| ||||||| ||| Sbjct 6179 GTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATG 6120 Query 2341 TTCGGATGGAAATGTGTTGATCTGCTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTG 2400 || ||||||||||||||||| ||| |||| || || || ||||||||||||||||||||| Sbjct 6119 TTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTG 6060 Query 2401 CACTGGTACTTTCCCTCGAATTGAATAAGGGCATGCAGATGAGGTTCCCCATTCTCGTGA 2460 || |||||| || |||||||| ||||| | || ||| ||||||||| || || ||| Sbjct 6059 CATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGA 6000 Query 2461 AGCTCTCTGCAAATTTTGATGTATAATTTGTTAACTGGTGTTTGTAGGGTTTTCAAT-TG 2519 ||||||||||| ||||||||| ||||| ||||| || | || |||||| ||| Sbjct 5999 GCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTA-GGTTTTGAATAAT 5941 Query 2520 GGAAAGGGTTTCTGATAGGGAAAGAGAACAGTGGGGATAAGTGAGAAAATAATTTTT 2576 || || | ||| | | |||||| ||||||||||| || |||||| |||||| Sbjct 5940 TGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8626147559460