Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004090.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq9745 398 1e-107 >seq9745 Length=7305 Score = 398 bits (440), Expect = 1e-107 Identities = 666/955 (70%), Gaps = 29/955 (3%) Strand=Plus/Minus Query 1659 TTAA-AGCTGAATTTTTATCCTCATTCAAGTA-CTCTTTATATGATGATGTTGGTCCTGG 1716 |||| ||||| || ||||| || | |||| | ||||||||| ||| | |||||||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGT-CAAGAAACTCTTTATAACTTGAGTTGGGTCCTGG 6769 Query 1717 ATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTAGT 1776 ||||||||||||||| || || || || ||||||| || || ||||| ||||| | | Sbjct 6768 ATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCT 6709 Query 1777 GTTGCTTTGCCAGTCCCTTTGGGCCCCCATAAATTCTTTAAAGTGCTTTAGATAGTGCGG 1836 || ||||| || |||| ||||||||| ||||| ||||| || |||| ||| |||| Sbjct 6708 ATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGG 6649 Query 1837 GTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTAGGGCTTAGATC 1896 || |||| |||||||||||| ||||| |||||||| |||| ||| ||||||| ||| Sbjct 6648 ATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATC 6589 Query 1897 AAGATGTCCACACAAATAATTGTGTGGTCCCAATGATCTGGCCCACATTGTTTTACCTGT 1956 | ||| || || || ||||||||||| || |||||||| ||||| |||||||| || || Sbjct 6588 ATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGT 6529 Query 1957 ACGACTATCACCTTCTATCACAATACTTTTGGGTCCCCAAGGCCGCGCAGCGGCAC-CAC 2015 | | |||||||||| || ||||| | |||| ||||| | ||| ||||| ||| Sbjct 6528 TCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCAC 6469 Query 2016 TCACATTCTCAGAAACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAAA 2075 || || || |||||| |||| ||| || || || | | |||| | || | Sbjct 6468 -AACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATA 6410 Query 2076 GAAATGGACAAACAAAAACCTCTAAAGGAGGTGC---AAAAATCCTATCTANNNNNNNNN 2132 ||| ||| ||||| | | | ||| || || || ||| |||| | Sbjct 6409 CAAAAGGAGAAACATATA---TTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCAT 6353 Query 2133 NNNNNNNATGAAACTGTAAAACAAAATCTTTAGGAGCCTTTTCCTTTAATATATTGAGGG 2192 |||||| ||||| | ||||||| || |||||| | | ||| | | || Sbjct 6352 TTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGG 6293 Query 2193 CCTCTGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGTTTGGCAAC 2252 | ||| ||| ||||| ||||| | || || || || | || || || | ||| || Sbjct 6292 CTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGAC 6233 Query 2253 CTCCTC------TAGCTGATCTTCCATCGATTTGGAAAACTCCATGATCAAGCACGTCTC 2306 | |||| | || ||||||||||| || ||||| |||| ||||| |||| Sbjct 6232 CCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTC 6173 Query 2307 CGTCTTTTTCCATGTATGCTTTAACATCTGTTGAGCT---TTTAGCTCCCTGAATGTTCG 2363 ||| || || || || | || || | ||||| |||| ||||||| ||||| | Sbjct 6172 CGTGCTTCTCGATATACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTG 6116 Query 2364 GATGGAAATGTGCTGACCTACTTGGGGAGGTGAGATCGAAGAATCTTTGATTCTTGCATT 2423 |||||||||||| |||||| |||| ||| |||||||||||||| | |||| ||||| Sbjct 6115 GATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATG 6056 Query 2424 GGAATTTTCCTTCGAACTGGATGAGAACATGCAGGTGTGGAGTCCCATCTTCATGTAGC- 2482 | | || |||||||| ||||| || || || || | || || | |||||| ||| Sbjct 6055 TGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AGCT 5997 Query 2483 TCTCTGCAGATTCTGATGAATAGTTTATTTGTAGGTGTTTCTAGGGCTT--TTAATTGGG 2540 |||||||| || ||||| || || ||| || || | |||| || ||||| | Sbjct 5996 TCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--G 5939 Query 2541 AAAGTGCTTCCTCTTTTGTGAGTGAGCAGTGAGGGTATGTTAGGAAATAAttttt 2595 | || |||||||||||||| || |||||||| || |||||||| ||| |||||| Sbjct 5938 AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8667360318840