Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004091.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq9745 639 2e-180 >seq9745 Length=7305 Score = 639 bits (708), Expect = 2e-180 Identities = 731/980 (75%), Gaps = 16/980 (2%) Strand=Plus/Minus Query 1598 CGAAGATCGCATT-ATGTATAGCCCAATTTTTTAATGCGGAATTCTTTTCTTCGTCTAAG 1656 |||||| ||||| ||| | |||||| || | || | ||||| |||||||| | Sbjct 6856 CGAAGACTGCATTTATG-AGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGA 6798 Query 1657 AACTCTTTATAGCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTTGGGATACCACCT 1716 ||||||||||| || || ||||||||||||||||| ||||||||||| || || || ||| Sbjct 6797 AACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCT 6738 Query 1717 TTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCAGTCCCTTTGGGCCCCCATG 1776 |||| || || ||||| || || || |||| | ||||| || |||| |||||||||| Sbjct 6737 TTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1777 AATTCCTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTATACCAAGCA 1836 ||||||||||| || |||| ||| | || || |||| |||||||||||| ||||| ||| Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1837 TCATTGCTGTATACCTTTGGGCTGAGATCAAGATGTCCACACAGATAATTGTGTGGTCCT 1896 |||||| |||| |||||||| | |||| ||| || || | ||||||||||| ||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 1897 AACGACCTAGCCCACATTGTTTTACCAGTACGACTATCACCTTCTATCACAATACTAATC 1956 || || |||||||| |||||||| ||||| | | |||||||||| || ||||| || Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Query 1957 GGTCTCAAAGGCCGCGCAGCGGCATTGACAACATTATTTGCAGACCATTCATGAAGTTCT 2016 |||| ||||| | ||| |||| | ||||| || | | || ||| || ||||| Sbjct 6497 GGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC 6438 Query 2017 TCTGGAACTTGATCGAAAGANNNNNNNNNNNNNGGACAAACAAATACCTCTAAAGGAGGT 2076 || || || | | || | ||| ||||| ||| | ||| || Sbjct 6437 TCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGC---AGGTGGA 6381 Query 2077 GCA---AAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACATAATCTTTT 2133 || || ||| |||| |||||||||||||| ||||||| ||||| |||||||||| Sbjct 6380 GCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTT 6321 Query 2134 GGAGCTAACTCCTTAATTACAT-TAAGAGCCTCTGACTTACTGCCTGTGTTAAGTGCTGC 2192 || | ||| |||||| | |||| || ||| ||| || | || || ||| | Sbjct 6320 GGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTC 6262 Query 2193 GGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTG------CAGATCGTCCGTCGAT 2246 |||||| | ||||| || |||||||| |||||||||| |||||| ||| || || Sbjct 6261 TGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCAT 6202 Query 2247 CTGAAACTCTCCCCACTCGAGGGTGTCTCCGTCCTTATCGATATAGGACTTGACGTCGGA 2306 ||| || |||||||| || | || ||||||| ||| |||||||| ||||| |||| ||| Sbjct 6201 CTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGA 6142 Query 2307 GCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAA 2366 |||||||||| ||||||| ||||| ||||||||||||| |||||||||||| ||||| | Sbjct 6141 GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAG 6082 Query 2367 GTCGAAGAATCTGTTATTCGTGCAGACGTATTTTCCCTCGAACTGGATAAGCACGTGGAT 2426 ||||||||||||||||||||||| ||| || || ||||| |||||||||||||||| Sbjct 6081 ATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Query 2427 ATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTGATGTATTTTTTGTTGGTTGG 2486 | |||| || | ||| ||| |||||||| || ||||||||||| ||||| ||| Sbjct 6021 ACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGG 5962 Query 2487 GGTTTCTAGGTTTTGAAGTTGGGAGAGTGCTTCCTCTTTAGTTAGAGAGCACTGTGGATA 2546 ||| | ||||||||||| ||||| ||||||||||| || |||||||| || ||||| Sbjct 5961 GGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2547 AGTGAGGAAATAATTTTTAG 2566 || || ||| |||||||| Sbjct 5901 TGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8607126285900