Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004097.1 Length=2615 Score E Sequences producing significant alignments: (Bits) Value seq9745 410 2e-111 >seq9745 Length=7305 Score = 410 bits (454), Expect = 2e-111 Identities = 650/929 (70%), Gaps = 16/929 (2%) Strand=Plus/Minus Query 1515 GTTTTTCTCTTCGCTGAGATACTCTTTATATGATGAATGGGGGCCAGGATTGCATAGGAA 1574 ||| || |||||| ||| |||||||||| ||| | ||| || |||||||| ||||| Sbjct 6816 GTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAA 6757 Query 1575 GATAGTGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTATTTGCAGTTTGATTGCCA 1634 ||| ||||| || || ||||||| || || |||||||||||| | | || | ||||| Sbjct 6756 GATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCA 6697 Query 1635 ATCACGTTGGGCCCCCATGAACTCTTTAAAGTGTTTCAGATAATGCGGATCAACGTCATC 1694 ||||| || |||||||||||| || ||||| ||||| | |||| |||||||||||| ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1695 TATGACGTTATACCATGCATGATTGGAGTAAATTCTCGGGTTGAGATCGATATGACCACA 1754 |||||||| ||||| |||| |||| ||| || | ||| | | ||| |||||| || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1755 TAGGTAATTGTGAGGACCCAGACTTCGGGCCCATATTGTCTTGCCTGTTCTTGATGGTCC 1814 || ||||||||| || || | || ||||||||||| || || ||||| | || Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1815 TTCAACGATGATTGATATAGGTCTCAACGGCCGCGCAGCGGAATCGGAAATATTTTCGTT 1874 ||| || | || ||||||| |||| | ||| || | || ||||| | Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTC 6457 Query 1875 AACCCAGTCCGACATAATTAAAGGGACATTGTTGAAAGT---GGATAACTGAAATGGAGG 1931 ||||||||| | ||| || || ||||| || || ||||| ||| |||| Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC---AAAAGGAGA 6400 Query 1932 AACCCACGGTTCCGTTGGTGGTGTGAATATTTTCTCCAGATTAGAACGGATGTTGTGATA 1991 ||| | | | | ||| | |||||| | |||| ||||| | | | ||| | Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 1992 TTGGACAACGAAATCTTTTGGCTGTTCTTCTTTTAATACCGTCATTGCAGCTTCAATACA 2051 | | | |||||||||| ||| ||| | | || | | || ||| || | Sbjct 6339 ACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGA 6280 Query 2052 ATCTGCATTTAACGCTTTTGCATATGAGTCGTTTGCGGATTGTTGTCCTCCTCTTG---- 2107 | | ||||| |||| ||| || || || || |||||||| || ||||||| Sbjct 6279 CCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGT 6220 Query 2108 --CAGATCTACCGTCGATCTGGAATTGGCCCCATTCAATGGTGACTCCATCCTTGTCGAT 2165 ||||||| || || |||||||||| ||||| ||||| || |||| | ||| ||||| Sbjct 6219 TGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGAT 6160 Query 2166 GTATGCTTTAACATCTGAACTTGATTTAACTCCCTGTATGTTCGGATGGAAATGTGTTGA 2225 || | || || | || || |||||| ||||||||||||| ||||||||||||||||| Sbjct 6159 ATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Query 2226 CCGTGTTGGGGATACCAAGTCGAATAATCTTTGATTTGTGCAGACGAATTTTCCTTCGAA 2285 || ||||| || || | ||||| ||||| | ||| ||||| | | || |||||||| Sbjct 6099 CCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAA 6040 Query 2286 CTGAATAAGCACGTGAAGATGAGGTTGCCCATCTTCGTGTAATTCTTCGCAAATCTTGAT 2345 || ||||||||||| ||| |||||| || | ||| || |||| |||||||||||| Sbjct 6039 TTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGAT 5980 Query 2346 GTACTTCTTATCTGTTGGAGTCTGTA--TATTAAGCAATTGTGAGAGGGTTTCTTCTTTT 2403 ||| ||||| | | ||| || | || | || | ||| |||||| | ||| |||||| Sbjct 5979 GTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAAT--TGAGAGAGCTTCCTCTTTT 5922 Query 2404 GAAATAGAACATCGAGGATATGTGAGAAA 2432 | || ||| || | |||||||| ||||| Sbjct 5921 GTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8182317843060