Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004101.1 Length=2613 Score E Sequences producing significant alignments: (Bits) Value seq9745 109 9e-21 >seq9745 Length=7305 Score = 109 bits (120), Expect = 9e-21 Identities = 242/362 (67%), Gaps = 12/362 (3%) Strand=Plus/Minus Query 1566 CCTGGATTGCACAGCACGATTGATGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1625 ||||||||||| || | ||||| || ||||||||||||| || || |||||||||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1626 TTACAGTTGGACTGCCAGTCTTTTTGGGCCCCAATAAGCTCTTTCCAGTGTTTCATCTTT 1685 | | || ||||||| || ||| |||||| || | || || | ||||| | Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTT------T 6660 Query 1686 AGATATTGGGGCGTGATATCATCAATGACGTTATACTCCACATAGTTTGAATAGACCTTT 1745 | ||| | || | | |||||||||||| ||| ||| || || ||| Sbjct 6659 AAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 1746 GCATTGAAATCAAGATGACCGCTCAAATAATTATGTGGGCCTAGTGCACGTGCCCACATT 1805 | | | |||| |||||||| || ||||| |||||||||| || | ||||| ||| Sbjct 6599 GGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATT 6540 Query 1806 GTCTTGCCGCATCGCGAATCACCCTCAATGACAATACTAATCGGTCTATCTGGCCGCGCA 1865 || || || || | ||||| || | || ||||| || |||| | |||| | || Sbjct 6539 GTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCA 6480 Query 1866 CA---ACTCCGACCAAAATATTCAGCAACCCAATGTTGCATATCCTCAGGAACGTTGTTA 1922 | |||| ||| | ||| ||||||| | ||| | | ||| || ||||||||| Sbjct 6479 GAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTA 6423 Query 1923 AA 1924 || Sbjct 6422 AA 6421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8175977418540