Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004147.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq9745 439 4e-120 >seq9745 Length=7305 Score = 439 bits (486), Expect = 4e-120 Identities = 578/799 (72%), Gaps = 18/799 (2%) Strand=Plus/Minus Query 1656 TTTTTCTCTTCGTCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAG 1715 || || |||||||| | ||||||||||| ||||||||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1716 ATAGTGGGTATTCCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAG 1775 || ||||| || || ||||||| || || ||||||||||| || |||| | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1776 TCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAATAATGCGGATCGACGTCATCA 1835 || |||| ||||||||||||||||||||| || ||||||||| ||||||| |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1836 ATGACGTTGTACCAGGCATCATTATTGTAGACCTTAGGACTAAGGTCTAAGTGACCACAC 1895 ||||||||||||||||||||||| ||||| || || || | || | ||||| || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1896 AGATAATTATGTGGACCCAAAGACCTAGCCCACATCGTCTTTCCTGTTCTACTATCACCC 1955 | ||||| ||||| || || || |||||||| || || || || |||||| ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1956 TCTATGACAATACTCATGGGTCTCAAAGTCCGCGCAGCGGCACCCATTACATTCTCAACA 2015 |||| || |||||||| |||| || || | ||| ||||| || || || || || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2016 GCCCATTCTTCAAGTTCTTCAGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACA 2075 |||| |||| ||| || || || | ||||| | | |||| ||||||||||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2076 TAAACCTCTACAGGAGGTG---TAAAAATCCTATCTAAATTACATTTTAAATTATGATAT 2132 || | | |||| || | || ||| |||| |||||| ||||| ||||| | Sbjct 6395 TATA---TTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAA 6339 Query 2133 TGAAAAATAAAATCTTTAGGGAGTTTTTCCCTATTTATTGCTAAAGCTGCGTCAGCTGAA 2192 | ||| | ||||||| ||| ||||||||||| |||| |||| ||||| || Sbjct 6338 CGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGAC 6279 Query 2193 CCTGCATTTAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTC------GA 2246 || | ||||||||| ||||| |||||||||| | |||||||| |||| Sbjct 6278 CCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTT 6219 Query 2247 CCATATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACTGTCCTCCTCGATG 2306 || |||||||||| ||||| || | ||||| || || ||| | || || |||||| Sbjct 6218 GCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATA 6159 Query 2307 TAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTTGAATTGGGTGGAG 2366 || ||||| || | |||||||| ||| ||||||| | |||||| | ||| || || || Sbjct 6158 TACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGAC 6099 Query 2367 TTATTAGGGTGAGTGAC---ATCGAAATGTCTGGTGTTTCTGAACTTGGATTTACCTTTG 2423 | | | ||| ||| |||||| |||| | || || | || | || |||| | Sbjct 6098 CTGGTTG---GAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCG 6042 Query 2424 AACTGGATGAGGGCATGGA 2442 || ||||| || | |||| Sbjct 6041 AATTGGATAAGCACGTGGA 6023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8597615649120