Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004153.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq9745 506 3e-140 >seq9745 Length=7305 Score = 506 bits (560), Expect = 3e-140 Identities = 711/995 (71%), Gaps = 16/995 (2%) Strand=Plus/Minus Query 1585 TGGCTCGGTGATGCTGACGAAGACTGCATTCTTTATTGCCCACGACTTTAATGCAGTATT 1644 ||||| ||||| | ||||||||||||| | | ||||| ||||| | || | || Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1645 CTTTTCTTCGTCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCACAGGAAGAT 1704 ||| |||||||| || | |||||||| ||||||||||| ||||||||||| |||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGAT 6754 Query 1705 AGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTC 1764 | || || || ||||||| || || || |||||||| || | || ||||| || Sbjct 6753 TGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATC 6694 Query 1765 CCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCAACGTCATCGAT 1824 |||| ||||||||||||||| |||||||| |||| || |||||||||||| ||| || Sbjct 6693 ACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAAT 6634 Query 1825 GACGTTGAACCAAGCATCATTACTGTACACCTTTGGGCTCAAATCAAGATGACCACACAG 1884 ||||||| |||| |||||||| ||||| |||||||| | |||| |||||| || | Sbjct 6633 GACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAA 6574 Query 1885 ATAATTGTGTGGACCCAATGATCGAGCCCACATCGTCTTCCCCGTCCTGCTATCACCCTC 1944 ||||||||||| || ||||||| |||||| || || ||||| || || ||||| || Sbjct 6573 GTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTC 6514 Query 1945 TATGACTATACTTATTGGTCGTAATGGCCGCGCAGCGGAACTGACGACGTTCTCTGCAGC 2004 || |||||||| || ||||| |||| | ||| || ||| || ||||| ||| || | Sbjct 6513 TACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAAC 6454 Query 2005 CCACTCTTCGAGTTCCTCTGGGACTCGATCAAACGAAGAAGAAGAAAAAGGCGAAACGTA 2064 ||| |||| || ||| || || | ||| | | || |||||| ||||| || Sbjct 6453 CCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATA 6394 Query 2065 AACCTCCATTGGAGGAGTAAAAATTCTATCTAAATTACTATTTAAATTATGGAATTGTAA 2124 | | ||||| || || |||| |||||| |||||| |||| || |||| Sbjct 6393 TATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAA 6334 Query 2125 AACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCGATGCTTTGGACCCCGA 2184 | | ||||||| || ||| ||||| | ||| | | ||| | || ||| ||||| || Sbjct 6333 ATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGA 6274 Query 2185 ATTGATTGCCTCGGCATATGCGTCGTTTGCAGACTGGCAACCTCCTC------TAGCCGA 2238 ||| | || || || || | || || || || || ||| |||| | || || Sbjct 6273 ATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGA 6214 Query 2239 TCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATATAGGC 2298 ||||||||| |||||||| |||| ||||| ||||||| || || ||||| | Sbjct 6213 TCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGA 6154 Query 2299 TTTGACATCTGTTGAGCT---TTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCT 2355 || || | ||||| |||| || |||| ||||| ||||||||||||| |||||| Sbjct 6153 CTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2356 GCTTGGGGATGTGAGATCGAAGAATCTTTGGTTTTTACATTGGAATTTCCCTTCGAATTG 2415 | |||| || |||||||||||||| | || | ||| | | |||||||||||||| Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2416 GATGAGAACATGCAGGTGAGGAGTTCC--ATCTTCGTGGAATTCTCTGCAGATGCGGATA 2473 ||| || || || || ||| ||||| | ||| || ||||||||| || ||| Sbjct 6036 GATAAGCACGTGGAGACGAG--GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATG 5979 Query 2474 AATAGTTTATTTACTGGGGTTTCTAGGTTTTTAAGTTGGGAAAGTGCTTCTTCTTTAGTG 2533 || || ||||||||||| | |||||||| || || || ||||| ||||| || Sbjct 5978 TATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTA 5919 Query 2534 AGAGAGCAGTGTGGATATGTGAGGAAATAATTTTT 2568 ||||||||||| |||||||| || ||| |||||| Sbjct 5918 AGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8594445436860