Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004192.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq9745 408 7e-111 >seq9745 Length=7305 Score = 408 bits (452), Expect = 7e-111 Identities = 518/714 (73%), Gaps = 8/714 (1%) Strand=Plus/Minus Query 1652 TTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATGCGGTCCTGGATTGCAGAGGAAG 1711 ||||| ||||| || | ||||||||||| || || | |||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1712 ATAGCGGGAATTCCACCTTTAATTTGCACTGGCTTTCCGTATTTCGTATTTGATTGCCAG 1771 || | ||| || || ||||||| || | |||||||||||| | |||| | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1772 TCCCTTTGGGCCCCCATGAATTCCTTAAAGTGTTTTAGGTAGTGGGGATCGACGTCATCA 1831 || |||| ||||||||||||||||||||| ||||||| || | ||||| |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1832 ATGACGTTGTACCAGGCGTCATTACTGTAGACCTTAGGGCTAAGGTCTAGATGACCACAC 1891 ||||||||||||||||| ||||| |||| || ||||| | || |||||| || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1892 AAATAATTGTGTGGACCCAACGACCTAGCCCACATGGTCTTCCCTGTTCGACTATCACCC 1951 || ||||||||||| || || || |||||||| || || ||||| |||| | ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1952 TCTACCACAATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTCACCACGTTCTCGGAA 2011 ||||| || |||||||| |||| |||| | ||| ||||||||| ||||| || | Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2012 GCCCATTCCTCAAG-TTCTCCGGGAACTTGATCAAAAGANNNNNNNNNNNNAGGAGAAAC 2070 |||| || | ||| ||||||| | ||| | ||| | ||||||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTG-TTAAATGTACTGGATACAAAAGGAGAAAC 6397 Query 2071 ATAAACCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTG 2130 ||| | | |||| || ||| |||| |||||| ||||| ||||| | | Sbjct 6396 ATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2131 AAAAATAAAATCTTTTGGGAGTTTTTCCCTTATTATTGCTAATGCCGCTTCAGCCGAACC 2190 ||| | ||||||||||| |||||||||| ||||| |||| || ||| || || Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCC 6277 Query 2191 CGCATTTAAGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTC------GAGC 2244 | ||||| ||| ||||| | |||||||||| | |||||||| |||| || Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2245 AGATCTTCCATCGATCTGAAAGCGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTA 2304 |||||||||||| ||||| || ||||| || || ||| |||| ||||||||| || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2305 GGACTTGACATCGGAGCTGGACTTAGCTCCCTGGAAATTTGGGTGGAATTGGGT 2358 ||||| || | ||||||||| ||| ||||||| | ||||| ||||| || || Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGT 6103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8619807134940